Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 3.7e-114 414.8 205 100.0
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.3e-23 113.2 192 42.2
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 6.8e-23 111.7 192 41.7
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.8e-21 106.3 188 39.9
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.2e-19 100.9 202 40.1
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 1.6e-19 100.5 201 36.8
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 5.9e-19 98.6 177 41.8
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.0e-18 97.8 173 39.9
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.3e-18 97.4 202 38.6
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.7e-18 97.1 209 38.3
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 5.0e-18 95.5 217 35.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 8.6e-18 94.7 175 38.9
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.5e-17 93.2 175 40.6
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 5.5e-17 92.0 203 36.9
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 7.2e-17 91.7 190 36.3
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 4.7e-16 89.0 171 37.4
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 8.8e-15 84.7 196 34.2
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 3.4e-14 82.8 229 33.6
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 5.7e-14 82.0 173 37.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 7.5e-14 81.6 125 41.6
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 7.5e-14 81.6 176 35.8
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.3e-13 80.9 169 37.9
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.3e-13 80.9 204 37.7
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.8e-13 79.7 89 52.8
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 2.8e-13 79.7 171 33.9
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.7e-13 79.3 204 33.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 3.7e-13 79.3 224 33.9
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 4.9e-13 79.0 83 55.4
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 6.3e-13 78.6 158 41.1
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 6.3e-13 78.6 179 37.4
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.1e-12 77.8 189 34.4
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.8e-12 77.0 181 37.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 3.1e-12 76.3 173 34.1
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 4.1e-12 75.9 211 33.6
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 4.1e-12 75.9 84 52.4
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 9.2e-12 74.7 81 53.1
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.2e-11 74.3 179 34.1
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 2.0e-11 73.6 123 39.8
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.0e-11 73.6 177 33.3
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 3.5e-11 72.8 185 33.5
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 3.5e-11 72.8 179 33.5
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.5e-11 72.4 215 31.6
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 5.9e-11 72.0 177 34.5
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 7.8e-11 71.6 167 37.1
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.7e-10 70.5 105 46.7
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.7e-10 70.5 210 32.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.8e-10 69.3 83 47.0
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.8e-10 69.3 121 40.5
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 3.8e-10 69.3 181 35.9
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 5.0e-10 68.9 183 31.1
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 5.0e-10 68.9 194 34.0
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 5.0e-10 68.9 94 44.7
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 6.6e-10 68.6 110 39.1
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.1e-09 67.8 88 48.9
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 1.5e-09 67.4 212 32.1
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 9.5e-09 64.7 196 31.1
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 9.5e-09 64.7 187 33.2
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.1e-08 63.5 81 45.7
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 2.8e-08 63.2 86 43.0
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.8e-08 63.2 197 29.9
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 3.6e-08 62.8 194 32.0
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 4.7e-08 62.4 82 45.1
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 4.7e-08 62.4 82 45.1
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 6.1e-08 62.0 130 40.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 6.1e-08 62.0 130 40.0
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 6.1e-08 62.0 49 61.2
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 6.1e-08 62.0 115 36.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 8.0e-08 61.6 124 36.3
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 8.0e-08 61.6 91 45.1
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.0e-07 61.2 94 41.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.0e-07 61.2 94 43.6
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.8e-07 60.5 94 43.6
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.8e-07 60.5 94 45.7
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.8e-07 60.5 94 45.7
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.8e-07 60.5 94 45.7
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.8e-07 60.5 170 32.4
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 2.3e-07 60.1 131 35.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 3.0e-07 59.7 94 42.6
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.0e-07 59.7 177 33.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 6.8e-07 58.5 146 33.6
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 6.8e-07 58.5 174 33.3
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 8.9e-07 58.2 93 40.9
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 3.4e-06 56.2 103 37.9
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 5.7e-06 55.5 158 29.1
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 5.7e-06 55.5 212 29.7


User provided reference genes

Program Settings