Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.3e-99 366.3 175 100.0
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.3e-35 153.7 80 88.8
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 3.6e-33 145.6 80 83.8
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 7.5e-31 137.9 80 82.5
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.9e-29 133.3 80 81.2
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 7.3e-26 121.3 92 65.2
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 7.3e-26 121.3 80 71.2
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 9.5e-26 120.9 72 80.6
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 2.1e-25 119.8 80 67.5
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.1e-25 119.8 76 73.7
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 1.4e-24 117.1 78 70.5
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 2.3e-24 116.3 80 70.0
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 2.3e-24 116.3 80 71.2
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 5.2e-24 115.2 80 66.2
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 6.8e-24 114.8 72 75.0
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 6.8e-24 114.8 80 66.2
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 2.0e-23 113.2 80 65.0
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 2.0e-23 113.2 75 70.7
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 9.8e-23 110.9 75 69.3
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 9.8e-23 110.9 81 64.2
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 1.7e-22 110.2 70 70.0
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 1.7e-22 110.2 70 67.1
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.7e-22 110.2 70 68.6
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 2.2e-22 109.8 79 64.6
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.9e-22 109.4 86 61.6
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 3.7e-22 109.0 87 64.4
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.7e-22 109.0 79 64.6
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 4.9e-22 108.6 82 63.4
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.4e-22 108.2 74 68.9
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.4e-22 108.2 74 68.9
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 8.3e-22 107.8 72 69.4
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 8.3e-22 107.8 70 67.1
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 8.3e-22 107.8 70 67.1
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 1.1e-21 107.5 78 62.8
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 1.9e-21 106.7 78 62.8
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.4e-21 106.3 73 65.8
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.4e-21 106.3 78 64.1
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 5.4e-21 105.1 78 62.8
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 5.4e-21 105.1 86 60.5
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 7.1e-21 104.8 80 63.8
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 7.1e-21 104.8 80 58.8
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 7.1e-21 104.8 78 64.1
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 7.1e-21 104.8 78 62.8
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 7.1e-21 104.8 71 69.0
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 9.2e-21 104.4 78 61.5
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.2e-20 104.0 85 58.8
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 1.2e-20 104.0 80 63.8
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.6e-20 103.6 78 62.8
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 2.7e-20 102.8 76 61.8
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.7e-20 102.8 70 67.1
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.7e-20 102.8 78 64.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 3.5e-20 102.4 78 60.3
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.6e-20 102.1 80 60.0
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 4.6e-20 102.1 78 62.8
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 6.0e-20 101.7 60 71.7
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 7.8e-20 101.3 69 63.8
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 7.8e-20 101.3 76 67.1
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 7.8e-20 101.3 80 60.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.0e-19 100.9 80 58.8
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.3e-19 100.5 73 61.6
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.3e-19 100.5 73 61.6
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 1.7e-19 100.1 81 61.7
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.7e-19 100.1 80 63.8
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 2.3e-19 99.8 72 65.3
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 2.3e-19 99.8 80 60.0
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 3.0e-19 99.4 79 60.8
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 3.0e-19 99.4 71 66.2
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 3.0e-19 99.4 69 65.2
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 3.0e-19 99.4 79 60.8
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 3.0e-19 99.4 71 67.6
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.9e-19 99.0 79 60.8
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 3.9e-19 99.0 73 64.4
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 3.9e-19 99.0 78 60.3
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.1e-19 98.6 72 63.9
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 5.1e-19 98.6 80 58.8
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 5.1e-19 98.6 80 57.5
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 6.6e-19 98.2 66 66.7
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 6.6e-19 98.2 66 66.7
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 6.6e-19 98.2 66 66.7
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 6.6e-19 98.2 69 68.1
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 6.6e-19 98.2 78 61.5
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 6.6e-19 98.2 78 61.5
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 6.6e-19 98.2 72 61.1
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 6.6e-19 98.2 79 59.5
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 8.6e-19 97.8 71 63.4
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 8.6e-19 97.8 72 61.1
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 8.6e-19 97.8 72 61.1
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 8.6e-19 97.8 80 57.5
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 8.6e-19 97.8 79 59.5
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 8.6e-19 97.8 78 61.5
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.1e-18 97.4 77 59.7
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.1e-18 97.4 77 61.0
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 1.1e-18 97.4 72 63.9
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.1e-18 97.4 78 55.1
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.5e-18 97.1 76 59.2
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.5e-18 97.1 78 55.1
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 1.5e-18 97.1 78 55.1
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.9e-18 96.7 71 62.0
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 1.9e-18 96.7 77 62.3
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 1.9e-18 96.7 78 55.1
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.5e-18 96.3 72 63.9
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 3.3e-18 95.9 78 57.7
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 3.3e-18 95.9 76 59.2
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 4.3e-18 95.5 77 62.3
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 4.3e-18 95.5 72 61.1
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 5.6e-18 95.1 79 60.8
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 7.3e-18 94.7 71 60.6
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 7.3e-18 94.7 77 59.7
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 4.7e-17 92.0 64 64.1
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.7e-17 92.0 73 58.9
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.7e-17 92.0 73 58.9
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.1e-16 90.9 78 55.1
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 1.4e-16 90.5 78 51.3
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 5.2e-16 88.6 71 54.9
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 5.2e-16 88.6 77 57.1
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 8.9e-16 87.8 74 51.4
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 5.8e-15 85.1 75 52.0
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 9.9e-15 84.3 74 51.4
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 9.9e-15 84.3 70 58.6
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 8.4e-14 81.3 60 61.7
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 3.5e-12 75.9 50 66.0
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 3.5e-12 75.9 61 54.1
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.0e-11 74.3 70 47.1
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 7.3e-10 68.2 59 50.8
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 7.3e-10 68.2 57 50.9
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.4e-08 63.9 72 38.9


User provided reference genes

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