Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.3e-259 899.8 701 100.0
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 1.1e-136 491.5 627 54.9
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 1.1e-77 295.4 711 47.7
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 5.4e-72 276.6 633 47.4
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.1e-61 242.3 421 51.5
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 2.1e-60 238.0 723 32.9
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 3.6e-60 237.3 701 42.5
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 6.2e-60 236.5 722 35.9
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 4.3e-53 213.8 588 40.6
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 8.1e-52 209.5 632 36.2
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 1.4e-51 208.8 629 34.2
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 3.4e-50 204.1 698 41.1
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 4.5e-50 203.8 627 36.4
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 1.7e-49 201.8 612 34.0
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 2.7e-47 194.5 380 46.3
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 1.0e-46 192.6 703 40.7
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.5e-45 188.7 647 39.3
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.9e-45 188.3 469 39.9
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 5.9e-42 176.8 644 32.3
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 2.2e-41 174.9 647 35.7
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 3.8e-41 174.1 708 36.9
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 1.4e-40 172.2 666 28.2
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.3e-38 165.6 460 32.8
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.9e-38 164.1 638 37.5
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 8.7e-38 162.9 696 38.6
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 1.1e-37 162.5 417 35.0
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 6.9e-35 153.3 637 39.2
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 3.4e-34 151.0 571 35.7
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 5.9e-34 150.2 540 35.9
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 7.7e-34 149.8 418 34.0
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.1e-32 146.0 646 31.1
PGSC0003DMG400020690 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.4e-32 145.6 458 35.4
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 2.5e-32 144.8 641 39.6
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 4.2e-32 144.1 649 36.4
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 5.5e-32 143.7 591 35.5
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 5.5e-32 143.7 438 35.6
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 7.2e-32 143.3 516 36.0
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 9.4e-32 142.9 632 36.9
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 2.1e-31 141.7 457 36.3
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 2.7e-31 141.4 663 27.6
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.0e-30 139.4 704 35.5
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.4e-30 139.0 488 29.1
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 1.1e-29 136.0 636 34.0
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 4.3e-29 134.0 651 31.0
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 7.4e-29 133.3 646 26.2
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.7e-28 132.1 633 33.0
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 2.2e-28 131.7 624 35.6
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.8e-28 131.3 318 40.3
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 3.7e-28 131.0 643 26.1
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 6.3e-28 130.2 496 33.1
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 8.2e-28 129.8 649 29.9
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.2e-28 129.8 548 31.6
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.4e-27 129.0 183 45.4
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.4e-27 129.0 660 27.7
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 1.8e-27 128.6 518 31.5
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 2.4e-27 128.3 486 32.9
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 2.4e-27 128.3 514 40.5
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 3.1e-27 127.9 631 31.4
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 5.3e-27 127.1 777 27.4
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 5.9e-26 123.6 644 27.5
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 1.3e-25 122.5 490 34.5
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.2e-25 121.7 560 45.5
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 2.2e-25 121.7 568 36.3
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 2.9e-25 121.3 563 33.6
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.8e-25 120.9 318 42.5
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 6.5e-25 120.2 530 31.5
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 8.5e-25 119.8 704 33.9
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.4e-24 119.0 465 29.5
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 4.2e-24 117.5 469 34.3
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 5.5e-24 117.1 530 33.8
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.1e-23 115.2 747 30.4
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 2.7e-23 114.8 670 33.9
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.7e-23 114.8 621 32.0
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 6.1e-23 113.6 534 27.9
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 2.3e-22 111.7 397 30.5
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 3.0e-22 111.3 643 34.4
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.7e-22 110.2 506 30.6
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 1.1e-21 109.4 161 44.1
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 2.0e-21 108.6 712 31.9
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 4.4e-21 107.5 638 26.3
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 5.7e-21 107.1 635 36.1
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 7.4e-21 106.7 414 33.1
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 9.7e-21 106.3 467 31.5
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 9.7e-21 106.3 209 37.8
PGSC0003DMG400046492 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.7e-20 105.5 379 33.2
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.7e-20 104.4 465 31.4
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.7e-20 104.4 465 31.4
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 3.7e-20 104.4 479 34.4
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 1.4e-19 102.4 696 27.3
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.1e-19 101.3 200 37.0
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.1e-19 100.9 255 42.4
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.1e-19 100.9 295 39.0
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 7.0e-19 100.1 629 30.7
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 9.1e-19 99.8 332 36.7
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.2e-18 99.4 295 38.6
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.6e-18 99.0 505 41.2
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 1.3e-17 95.9 645 33.0
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.7e-17 95.5 566 27.0
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 3.8e-17 94.4 704 34.9
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 8.5e-17 93.2 396 35.6
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.1e-16 92.8 363 32.8
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.1e-16 92.8 213 35.7
Gohir.D03G040150 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-16 92.4 505 44.4
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 2.5e-16 91.7 413 33.7
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 2.5e-16 91.7 293 38.6
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 5.5e-16 90.5 435 32.6
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 9.4e-16 89.7 653 28.6
Nn5g30016 Nelumbo nucifera HOM05D002657 ORTHO05D004838 1.6e-15 89.0 373 47.5
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.6e-15 89.0 390 26.9
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 2.1e-15 88.6 360 33.3
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 2.1e-15 88.6 335 28.4
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 8.0e-15 86.7 125 51.2
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 8.0e-15 86.7 738 30.8
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 5.2e-14 84.0 710 27.7
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 8.8e-14 83.2 316 25.6
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 7.5e-13 80.1 294 27.2
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 9.7e-13 79.7 315 30.8
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 1.3e-12 79.3 328 24.7
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 3.7e-12 77.8 295 39.0
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 3.7e-12 77.8 214 32.7
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 3.7e-12 77.8 386 29.3
Ca_24433_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 6.3e-12 77.0 310 25.5
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 9.1e-11 73.2 167 32.9
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 2.7e-10 71.6 214 31.3
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 3.5e-10 71.2 151 35.1
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 3.5e-10 71.2 315 24.1
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 4.5e-10 70.9 356 26.4
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 7.7e-10 70.1 105 43.8
Prupe.2G328200 Prunus persica HOM05D002657 ORTHO05D003059 7.7e-10 70.1 310 24.2
LjContig00222g0028031 Lotus japonicus HOM05D002657 ORTHO05D003059 1.3e-09 69.3 324 25.3
SalBow2G3352 Salvia bowleyana HOM05D002657 ORTHO05D003059 1.3e-09 69.3 311 22.8
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 1.7e-09 68.9 166 35.5
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.2e-09 68.6 388 31.7
TWI34G0829 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 2.2e-09 68.6 310 25.5
Duzib177G1021 Durio zibethinus HOM05D002657 ORTHO05D003059 2.9e-09 68.2 316 23.4
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 3.8e-09 67.8 78 51.3
Nitab4.5_0002998g0040 Nicotiana tabacum HOM05D002657 ORTHO05D003059 3.8e-09 67.8 321 22.1
Manes.09G128400 Manihot esculenta HOM05D002657 ORTHO05D003059 5.0e-09 67.4 310 22.9
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 5.0e-09 67.4 307 25.7
Gohir.D08G241100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 6.5e-09 67.0 291 34.7
PSO782G1876 Papaver somniferum HOM05D002657 ORTHO05D003059 6.5e-09 67.0 165 30.9
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 8.5e-09 66.6 377 30.8
Gohir.A08G221658 Gossypium hirsutum HOM05D002657 ORTHO05D003059 8.5e-09 66.6 291 33.3
CSS0013936 Camellia sinensis var. sinensis HOM05D002657 ORTHO05D003059 1.5e-08 65.9 321 30.2
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 1.5e-08 65.9 194 28.9
Lalb_Chr09g0320111 Lupinus albus HOM05D002657 ORTHO05D003059 1.9e-08 65.5 322 29.5
Atru.chr12.1915 Acer truncatum HOM05D002657 ORTHO05D003059 4.2e-08 64.3 303 23.8
Gorai.004G256500 Gossypium raimondii HOM05D002657 ORTHO05D003059 4.2e-08 64.3 298 35.2
Zm00001eb024910 Zea mays HOM05D002657 ORTHO05D003059 4.2e-08 64.3 334 26.0
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 5.5e-08 63.9 328 22.0
Lalb_Chr05g0211221 Lupinus albus HOM05D002657 ORTHO05D003059 7.2e-08 63.5 322 24.8
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 9.4e-08 63.2 138 34.8
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 1.2e-07 62.8 371 24.8
Duzib106G0276 Durio zibethinus HOM05D002657 ORTHO05D003059 1.2e-07 62.8 310 24.2
Psat2g189280 Pisum sativum HOM05D002657 ORTHO05D003059 1.2e-07 62.8 310 31.6
COL.COLO4_15190 Corchorus olitorius HOM05D002657 ORTHO05D003059 1.6e-07 62.4 254 24.4
Thecc.05G219100 Theobroma cacao HOM05D002657 ORTHO05D003059 1.6e-07 62.4 147 30.6
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 3.6e-07 61.2 131 34.4
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 3.6e-07 61.2 138 33.3
CDE06G2095 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 4.7e-07 60.8 320 30.6
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 4.7e-07 60.8 135 34.8
Glyma.11G009200 Glycine max HOM05D002657 ORTHO05D003059 1.0e-06 59.7 291 25.8
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 1.4e-06 59.3 211 26.5
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 1.4e-06 59.3 75 49.3
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 1.4e-06 59.3 60 55.0
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 1.4e-06 59.3 60 55.0
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 1.4e-06 59.3 60 55.0
FvH4_7g34141 Fragaria vesca HOM05D002657 ORTHO05D003059 1.4e-06 59.3 310 28.1
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 1.4e-06 59.3 183 29.0
Migut.F00936 Erythranthe guttata HOM05D002657 ORTHO05D003059 3.0e-06 58.2 310 21.6
MD01G1237800 Malus domestica HOM05D002657 ORTHO05D003059 3.0e-06 58.2 330 23.0
Sp5g19380 Schrenkiella parvula HOM05D002657 ORTHO05D003059 3.0e-06 58.2 157 28.0
SGA_v2.0_scaffold50G18450 Striga asiatica HOM05D002657 ORTHO05D003059 3.0e-06 58.2 342 24.9
GSVIVG01024346001 Vitis vinifera HOM05D002657 ORTHO05D003059 3.0e-06 58.2 147 32.7
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 6.8e-06 57.0 151 32.5
CDE03G0449 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 6.8e-06 57.0 145 27.6
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 6.8e-06 57.0 179 34.6


User provided reference genes

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