Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0159700 Rhododendron simsii HOM05D002620 ORTHO05D338944 3.2e-127 458.4 226 100.0
Hma1.2p1_0047F.1_g027930 Hydrangea macrophylla HOM05D002620 ORTHO05D008789 2.8e-14 83.2 128 40.6
Actinidia28868 Actinidia chinensis HOM05D002620 ORTHO05D008789 4.8e-14 82.4 138 38.4
GSVIVG01005874001 Vitis vinifera HOM05D002620 ORTHO05D008789 4.8e-14 82.4 173 34.1
DCAR_014232 Daucus carota HOM05D000868 ORTHO05D000711 1.1e-13 81.3 185 33.5
vmacro18606 Vaccinium macrocarpon HOM05D002620 ORTHO05D008789 1.1e-13 81.3 127 39.4
SGA_v2.0_scaffold54G19496 Striga asiatica HOM05D002620 ORTHO05D008789 1.4e-13 80.9 127 39.4
Actinidia28228 Actinidia chinensis HOM05D002620 ORTHO05D008789 1.8e-13 80.5 124 39.5
MSTRG.23338 Avicennia marina HOM05D002620 ORTHO05D008789 2.4e-13 80.1 127 40.2
Lsat_1_v5_gn_5_43580 Lactuca sativa HOM05D002620 ORTHO05D008789 4.1e-13 79.3 137 37.2
Rhsim08G0009800 Rhododendron simsii HOM05D002620 ORTHO05D008789 4.1e-13 79.3 136 39.0
SalBow3G0732 Salvia bowleyana HOM05D002620 ORTHO05D008789 5.4e-13 79.0 157 35.0
Nn5g29084 Nelumbo nucifera HOM05D002620 ORTHO05D008789 9.1e-13 78.2 127 40.9
Dinv21919 Davidia involucrata HOM05D002620 ORTHO05D008789 1.2e-12 77.8 137 36.5
Cc07_g15340 Coffea canephora HOM05D002620 ORTHO05D008789 2.0e-12 77.0 127 36.2
Migut.H02365 Erythranthe guttata HOM05D002620 ORTHO05D008789 2.0e-12 77.0 137 34.3
Lj2A551T18 Lonicera japonica HOM05D002620 ORTHO05D008789 4.5e-12 75.9 127 37.8
Hund16276 Selenicereus undatus HOM05D002620 ORTHO05D008789 1.0e-11 74.7 127 37.8
Ciclev10026221m.g Citrus clementina HOM05D002620 ORTHO05D008789 1.3e-11 74.3 148 33.8
Atru.chr4.107 Acer truncatum HOM05D002620 ORTHO05D008789 2.9e-11 73.2 127 36.2
EL10Ac6g15091 Beta vulgaris HOM05D002620 ORTHO05D008789 2.9e-11 73.2 136 37.5
Manes.12G136200 Manihot esculenta HOM05D002620 ORTHO05D008789 2.9e-11 73.2 117 37.6
Nitab4.5_0001929g0050 Nicotiana tabacum HOM05D002620 ORTHO05D008789 2.9e-11 73.2 127 37.0
AUR62002019 Chenopodium quinoa HOM05D002620 ORTHO05D008789 3.8e-11 72.8 136 36.0
TAR376G0898 Trochodendron aralioides HOM05D002620 ORTHO05D008789 3.8e-11 72.8 137 36.5
TAR628G0934 Trochodendron aralioides HOM05D002620 ORTHO05D008789 5.0e-11 72.4 137 37.2
Hund13634 Selenicereus undatus HOM05D002620 ORTHO05D008789 6.5e-11 72.0 127 37.8
Sc16g0005590 Simmondsia chinensis HOM05D002620 ORTHO05D008789 6.5e-11 72.0 127 37.8
TWI74G0115 Tripterygium wilfordii HOM05D002620 ORTHO05D008789 6.5e-11 72.0 137 34.3
FvH4_1g21130 Fragaria vesca HOM05D002620 ORTHO05D008789 8.5e-11 71.6 140 35.0
PGSC0003DMG400020613 Solanum tuberosum HOM05D002620 ORTHO05D008789 8.5e-11 71.6 128 38.3
Psat7g053680 Pisum sativum HOM05D002620 ORTHO05D008789 1.1e-10 71.2 129 34.1
Os09g0370200 Oryza sativa ssp. japonica HOM05D002620 ORTHO05D008789 1.5e-10 70.9 133 36.1
COL.COLO4_09946 Corchorus olitorius HOM05D002620 ORTHO05D008789 1.9e-10 70.5 155 31.6
CAN.G919.1 Capsicum annuum HOM05D002620 ORTHO05D008789 2.5e-10 70.1 128 36.7
Solyc04g055010.3 Solanum lycopersicum HOM05D002620 ORTHO05D008789 2.5e-10 70.1 138 36.2
Sopen04g024850 Solanum pennellii HOM05D002620 ORTHO05D008789 3.2e-10 69.7 128 37.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 3.2e-10 69.7 127 34.6
Prupe.6G182800 Prunus persica HOM05D002620 ORTHO05D008789 4.2e-10 69.3 138 32.6
Gohir.A02G143800 Gossypium hirsutum HOM05D002620 ORTHO05D008789 5.5e-10 68.9 154 32.5
Gohir.D03G036800 Gossypium hirsutum HOM05D002620 ORTHO05D008789 5.5e-10 68.9 154 33.1
Gorai.003G038600 Gossypium raimondii HOM05D002620 ORTHO05D008789 5.5e-10 68.9 154 33.1
Thecc.01G103500 Theobroma cacao HOM05D002620 ORTHO05D008789 7.2e-10 68.6 127 36.2
Ca_17731_v3 Cicer arietinum L. HOM05D002620 ORTHO05D008789 1.6e-09 67.4 127 34.6
ECA248G3736 Erigeron canadensis HOM05D002620 ORTHO05D008789 1.6e-09 67.4 132 34.1
RcHm_v2.0_Chr2g0114911 Rosa chinensis HOM05D002620 ORTHO05D008789 1.6e-09 67.4 140 32.1
TPR.G7193 Trifolium pratense HOM05D002620 ORTHO05D008789 1.6e-09 67.4 127 34.6
MBI02_g08738_MAGBIO Magnolia biondii HOM05D002620 ORTHO05D008789 2.1e-09 67.0 129 32.6
CDE04G2277 Ceratophyllum demersum HOM05D002620 ORTHO05D008789 2.7e-09 66.6 127 31.5
Medtr8g090295 Medicago truncatula HOM05D002620 ORTHO05D008789 2.7e-09 66.6 127 34.6
PSO541G4478 Papaver somniferum HOM05D002620 ORTHO05D008789 3.6e-09 66.2 133 36.1
CiPaw.03G140700 Carya illinoinensis HOM05D002620 ORTHO05D008789 4.7e-09 65.9 127 33.1
Zm00001eb098680 Zea mays HOM05D002620 ORTHO05D008789 4.7e-09 65.9 133 33.1
Lalb_Chr13g0296001 Lupinus albus HOM05D002620 ORTHO05D008789 6.1e-09 65.5 127 33.1
PSO781G0034 Papaver somniferum HOM05D002620 ORTHO05D008789 6.1e-09 65.5 133 35.3
BcaC01g00318 Brassica carinata HOM05D002620 ORTHO05D008789 8.0e-09 65.1 176 27.3
BolC3t20081H Brassica oleracea HOM05D002620 ORTHO05D008789 8.0e-09 65.1 176 27.3
Eucgr.H04809 Eucalyptus grandis HOM05D002620 ORTHO05D008789 8.0e-09 65.1 137 31.4
BcaB03g12261 Brassica carinata HOM05D002620 ORTHO05D008789 1.0e-08 64.7 176 28.4
CARHR246980 Cardamine hirsuta HOM05D002620 ORTHO05D008789 1.0e-08 64.7 137 29.2
Thhalv10025949m.g Eutrema salsugineum HOM05D002620 ORTHO05D008789 1.0e-08 64.7 185 28.6
PGR102G2259 Punica granatum HOM05D002620 ORTHO05D008789 1.0e-08 64.7 127 33.1
AL7G11940 Arabidopsis lyrata HOM05D002620 ORTHO05D008789 1.4e-08 64.3 137 29.2
Cpa.g.sc283.6 Carica papaya HOM05D002620 ORTHO05D008789 1.4e-08 64.3 138 32.6
Potri.005G076700 Populus trichocarpa HOM05D002620 ORTHO05D008789 1.4e-08 64.3 127 30.7
A08p23400 Brassica napus HOM05D002620 ORTHO05D008789 1.8e-08 63.9 176 27.3
BraA08t34294Z Brassica rapa HOM05D002620 ORTHO05D008789 1.8e-08 63.9 176 27.3
Carub.0007s0162 Capsella rubella HOM05D002620 ORTHO05D008789 1.8e-08 63.9 176 25.0
Glyma.08G137200 Glycine max HOM05D002620 ORTHO05D008789 2.3e-08 63.5 127 33.1
MD01G1027600 Malus domestica HOM05D002620 ORTHO05D008789 2.3e-08 63.5 138 31.9
Sed0023302 Sechium edule HOM05D002620 ORTHO05D008789 2.3e-08 63.5 129 32.6
Nitab4.5_0000104g0200 Nicotiana tabacum HOM05D002620 ORTHO05D008789 3.0e-08 63.2 155 31.6
Aqoxy6G00601 Aquilegia oxysepala HOM05D002620 ORTHO05D008789 4.0e-08 62.8 127 32.3
AT4G39740 Arabidopsis thaliana HOM05D002620 ORTHO05D008789 4.0e-08 62.8 137 28.5
THA.LOC104807706 Tarenaya hassleriana HOM05D002620 ORTHO05D008789 5.2e-08 62.4 137 29.2
ATR0564G473 Amborella trichopoda HOM05D002620 ORTHO05D008789 6.8e-08 62.0 127 31.5
arahy.Tifrunner.gnm1.ann1.ERM2F6 Arachis hypogaea HOM05D002620 ORTHO05D008789 6.8e-08 62.0 127 32.3
arahy.Tifrunner.gnm1.ann1.QD8CU8 Arachis hypogaea HOM05D002620 ORTHO05D008789 6.8e-08 62.0 127 32.3
Peaxi162Scf00478g00017 Petunia axillaris HOM05D002620 ORTHO05D008789 6.8e-08 62.0 110 36.4
Potri.007G091300 Populus trichocarpa HOM05D002620 ORTHO05D008789 6.8e-08 62.0 136 30.9
QL06p049886 Quercus lobata HOM05D002620 ORTHO05D008789 6.8e-08 62.0 137 31.4
CSS0034240 Camellia sinensis var. sinensis HOM05D002620 ORTHO05D008789 8.8e-08 61.6 77 46.8
CANSAT01G0269 Cannabis sativa HOM05D002620 ORTHO05D008789 8.8e-08 61.6 137 30.7
ClCG01G018870 Citrullus lanatus HOM05D002620 ORTHO05D008789 8.8e-08 61.6 129 32.6
CsaV3_6G045530 Cucumis sativus L. HOM05D002620 ORTHO05D008789 1.2e-07 61.2 129 31.8
Sabra05G0063300 Salix brachista HOM05D002620 ORTHO05D008789 1.2e-07 61.2 154 27.9
MELO3C007766.2 Cucumis melo HOM05D002620 ORTHO05D008789 2.0e-07 60.5 129 31.8
Sp7g36150 Schrenkiella parvula HOM05D002620 ORTHO05D008789 2.6e-07 60.1 185 28.6
Manes.13G091800 Manihot esculenta HOM05D002620 ORTHO05D008789 4.4e-07 59.3 127 30.7
Lj4g0005989 Lotus japonicus HOM05D002620 ORTHO05D008789 5.7e-07 58.9 147 29.3
THA.LOC104804154 Tarenaya hassleriana HOM05D002620 ORTHO05D008789 5.7e-07 58.9 137 27.7
FAN26G3277 Fragaria x ananassa HOM05D002620 ORTHO05D008789 7.5e-07 58.5 174 29.3
FAN28G1022 Fragaria x ananassa HOM05D002620 ORTHO05D008789 7.5e-07 58.5 174 28.7
Sabra07G0075000 Salix brachista HOM05D002620 ORTHO05D008789 9.8e-07 58.2 127 29.9
SHI11539 Sapria himalayana HOM05D002620 ORTHO05D008789 9.8e-07 58.2 129 29.5
FAN23G0997 Fragaria x ananassa HOM05D002620 ORTHO05D008789 1.7e-06 57.4 174 28.2
unitig_27.g25363 Utricularia gibba HOM05D002620 ORTHO05D008789 2.8e-06 56.6 68 42.6


User provided reference genes

Program Settings