Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 0.0e+00 1208.0 652 100.0
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.2e-238 830.1 621 76.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 2.4e-231 805.8 661 71.3
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.2e-169 600.9 674 56.8
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 8.7e-165 584.7 680 55.3
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.6e-155 553.9 663 53.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.4e-154 550.1 672 53.0
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 9.9e-153 544.7 669 52.8
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.3e-152 544.3 677 53.0
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 1.3e-149 534.3 692 50.9
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 4.3e-148 529.3 667 51.0
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 7.4e-148 528.5 667 51.3
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 6.2e-147 525.4 659 52.2
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 6.2e-147 525.4 648 52.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 8.1e-147 525.0 670 52.1
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.1e-146 524.6 670 52.4
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.8e-146 523.9 673 51.3
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 7.6e-145 518.5 703 48.5
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.1e-143 514.6 676 49.4
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 3.2e-143 513.1 697 47.1
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 3.2e-143 513.1 637 50.1
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 9.3e-143 511.5 679 48.7
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.6e-142 510.8 706 47.9
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.7e-142 510.0 710 48.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.7e-142 510.0 669 51.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 5.7e-140 502.3 660 49.4
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 9.6e-140 501.5 696 49.9
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.3e-139 498.8 670 49.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 6.3e-139 498.8 658 49.8
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 8.2e-139 498.4 666 49.7
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.4e-138 497.7 670 49.1
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.8e-138 497.3 697 48.6
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.2e-137 494.6 402 67.4
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 2.0e-137 493.8 674 49.4
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.5e-137 492.7 739 45.9
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 4.5e-137 492.7 673 48.7
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 3.8e-136 489.6 692 48.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 3.2e-135 486.5 483 59.0
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 4.2e-135 486.1 699 47.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 5.5e-135 485.7 342 77.5
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 5.5e-135 485.7 700 46.9
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 7.9e-134 481.9 644 50.2
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.3e-133 481.1 672 47.2
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.3e-133 481.1 681 45.7
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.9e-132 477.2 670 49.4
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.3e-131 474.6 696 48.0
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.2e-131 473.8 669 48.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.7e-131 473.0 350 74.9
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.8e-130 470.7 675 47.6
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.4e-130 470.3 680 46.6
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.1e-130 469.9 682 47.1
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.1e-130 469.9 677 46.5
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 6.9e-130 468.8 630 48.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.9e-128 463.4 681 45.2
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 3.2e-127 459.9 669 45.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 7.2e-127 458.8 686 47.2
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 7.2e-127 458.8 691 46.5
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.7e-126 456.8 689 46.2
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.0e-125 454.9 695 45.2
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.4e-125 454.5 693 45.7
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.0e-125 453.4 637 46.6
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 8.8e-125 451.8 686 45.3
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.0e-124 450.7 671 46.3
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 2.0e-124 450.7 667 46.5
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 2.5e-124 450.3 671 46.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 3.3e-124 449.9 670 45.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 5.7e-124 449.1 673 46.8
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 9.7e-124 448.4 643 47.6
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.7e-123 447.6 678 45.1
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.7e-123 446.4 733 43.5
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.4e-122 444.5 680 46.2
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 3.4e-121 439.9 644 46.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 5.0e-120 436.0 660 46.2
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 8.5e-120 435.3 691 44.0
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.1e-119 434.9 733 41.3
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 5.5e-119 432.6 687 45.3
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 5.5e-119 432.6 682 44.9
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 7.2e-119 432.2 679 44.8
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.4e-119 431.8 700 44.7
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 5.1e-117 426.0 676 43.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.1e-116 424.9 650 47.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.5e-116 424.5 673 44.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.1e-114 418.3 665 43.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 4.1e-114 416.4 679 44.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 7.0e-114 415.6 527 53.1
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.2e-111 406.4 680 42.1
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-110 404.8 676 43.5
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-110 404.8 476 52.5
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-110 404.8 476 52.5
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 8.0e-110 402.1 388 60.3
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.0e-109 401.7 612 43.8
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.4e-108 396.4 675 43.1
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.2e-107 394.0 602 44.9
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.7e-104 384.4 671 42.8
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-103 381.7 692 41.8
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.2e-103 380.2 658 42.6
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.7e-102 377.1 571 45.2
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.4e-98 364.8 663 41.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.6e-97 361.3 349 59.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.0e-97 360.9 349 59.6
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 5.5e-95 352.8 687 40.3
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.3e-93 347.4 628 39.5
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.3e-93 347.4 393 52.4
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 5.4e-90 336.3 326 64.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.1e-65 254.6 434 44.0
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.0e-64 250.8 423 43.0
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.4e-60 236.9 287 51.6
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 4.9e-59 233.4 454 37.9
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 8.6e-56 222.6 223 57.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 4.7e-54 216.9 469 36.5
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 6.2e-54 216.5 536 32.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.1e-53 215.7 292 46.9
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 4.9e-51 206.8 522 32.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-47 195.3 130 76.9
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 9.6e-47 192.6 564 31.0
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.8e-46 190.3 123 78.9
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 7.6e-44 183.0 517 31.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 9.3e-42 176.0 114 77.2
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.0e-40 171.0 112 78.6
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 7.4e-39 166.4 165 55.8
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 9.6e-39 166.0 198 49.5
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.8e-37 161.8 473 33.6
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 2.0e-36 158.3 116 72.4
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 4.9e-35 153.7 117 71.8
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 4.6e-33 147.1 112 68.8
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.3e-32 144.8 140 62.9
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-29 135.6 139 60.4
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-29 134.8 140 59.3
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.0e-28 131.7 104 65.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.1e-26 125.9 93 69.9
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.3e-26 122.9 109 54.1
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-25 122.5 95 67.4
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.6e-25 122.1 148 50.7
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.1e-24 117.1 231 35.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 1.5e-20 105.5 398 30.2
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.3e-19 102.4 83 66.3
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 3.2e-18 97.8 347 27.4
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-12 79.0 114 47.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 5.0e-11 73.9 47 80.9
Actinidia16045 Actinidia chinensis HOM05D004921 ORTHO05D006008 8.5e-11 73.2 42 85.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.9e-10 72.0 53 67.9
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 5.7e-07 60.5 153 25.5
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 2.8e-06 58.2 45 64.4


User provided reference genes

Program Settings