Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2707.6 1391 100.0
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 2338.1 1467 84.5
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 2299.2 1446 83.3
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2245.3 1444 82.1
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 2229.5 1446 80.2
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2114.3 1450 76.8
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 2087.4 1444 76.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 2047.7 1446 74.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 2047.3 1446 74.6
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2033.8 1448 74.4
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 1999.9 1446 73.2
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 1998.0 1455 73.6
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1989.2 1446 73.4
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 1980.3 1445 72.7
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 1975.3 1445 72.6
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 1973.7 1443 72.5
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1966.0 1447 72.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1963.7 1449 72.4
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 1963.0 1445 72.0
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 1962.2 1446 71.9
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 1961.0 1446 71.5
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1959.9 1442 72.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1958.3 1440 72.1
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 1958.3 1440 72.1
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 1953.3 1447 71.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 1952.9 1447 71.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1947.6 1446 71.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1941.8 1450 71.6
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1941.4 1447 71.1
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1939.5 1446 71.2
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 1938.3 1450 71.7
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 1935.6 1445 71.1
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 1935.2 1446 71.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1934.5 1450 71.4
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1931.4 1450 71.4
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 1931.4 1446 71.3
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1930.2 1447 71.0
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 1924.8 1444 70.4
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 1922.9 1458 71.2
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1917.1 1447 70.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1913.7 1447 70.5
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 1908.6 1444 70.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 1900.6 1444 70.6
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 1899.8 1446 70.1
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 1895.6 1443 70.2
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1887.1 1444 69.3
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1886.3 1446 69.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 1878.6 1448 69.8
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 1877.8 1447 68.6
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 1874.0 1445 69.3
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 1869.4 1448 68.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1857.8 1445 68.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 1856.3 1446 69.0
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1847.0 1457 68.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1843.9 1457 68.0
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 1843.6 1444 67.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 1841.6 1455 68.1
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 1835.5 1444 67.5
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 1823.5 1449 67.6
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 1823.1 1444 67.9
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 1801.6 1446 66.7
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1798.9 1446 65.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 1793.9 1448 66.3
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 1790.8 1443 66.3
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1788.5 1443 66.0
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 1788.5 1443 66.0
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1787.3 1443 65.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 1787.3 1443 66.1
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 1783.5 1443 65.8
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 1780.0 1441 65.9
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 1771.9 1444 66.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 1770.0 1445 65.7
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 1762.7 1456 64.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1761.9 1444 65.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 1749.2 1451 64.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 1731.5 1443 64.9
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1716.0 1442 63.7
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1595.1 1454 60.4
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1560.8 1457 58.5
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 1533.1 1460 58.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 1524.2 1222 67.5
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 1500.3 1201 67.5
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1454.5 1004 76.0
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 1437.9 1192 66.1
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1434.1 1397 59.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 1401.3 1463 54.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1239.6 1081 62.9
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1211.4 1494 48.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1141.7 1508 45.9
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1141.7 1517 46.2
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1117.8 1449 46.9
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1107.0 1019 60.6
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 4.2e-310 1068.5 1488 43.4
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 6.1e-309 1064.7 781 71.2
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 2.6e-307 1059.3 1128 55.6
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 3.7e-290 1002.3 767 69.0
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 3.5e-272 942.6 835 64.2
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.3e-270 936.0 975 55.7
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.4e-267 925.6 775 62.8
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.9e-250 869.8 1189 46.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 7.4e-206 722.2 410 89.3
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.6e-203 713.8 441 81.4
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 3.6e-200 703.4 607 61.1
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.3e-197 694.9 1882 30.8
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 3.6e-184 650.2 607 58.0
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 1.1e-172 612.1 455 71.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.9e-146 523.9 609 47.8
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.2e-132 477.6 327 72.8
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.6e-123 448.7 270 82.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.0e-122 444.5 250 87.6
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 3.1e-111 407.9 361 60.9
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 2.0e-110 405.2 309 66.0
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.3e-101 375.9 334 63.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.4e-95 355.9 217 83.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 4.2e-92 344.4 484 46.5
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 6.1e-91 340.5 244 67.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-90 338.6 307 60.9
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-90 337.0 456 46.3
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 5.7e-73 280.8 312 51.9
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 8.3e-64 250.4 247 57.5
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 5.4e-63 247.7 166 74.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-45 189.1 195 51.8
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-35 156.8 257 38.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-34 152.5 118 66.1
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 9.9e-33 147.1 82 85.4
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 3.6e-27 128.6 112 61.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-25 123.6 137 53.3
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-25 123.6 145 53.1
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.5e-25 123.2 86 70.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 5.8e-25 121.3 131 54.2
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 4.9e-24 118.2 109 56.9
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 6.0e-22 111.3 70 81.4
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-09 69.7 45 73.3


User provided reference genes

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