Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.4e-63 246.9 206 100.0
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.6e-62 242.7 206 99.0
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.7e-35 152.9 115 69.6
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.9e-34 149.4 116 65.5
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 6.6e-26 121.7 117 55.6
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.2e-24 117.5 117 55.6
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 4.7e-24 115.5 115 53.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.0e-23 112.8 117 51.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.0e-22 110.2 117 50.4
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 2.6e-22 109.8 115 51.3
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 3.7e-21 105.9 92 67.4
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 3.7e-21 105.9 112 47.3
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 3.7e-21 105.9 116 50.9
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 4.9e-21 105.5 76 63.2
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 4.9e-21 105.5 76 64.5
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 4.9e-21 105.5 76 63.2
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 4.9e-21 105.5 83 60.2
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.1e-20 104.4 76 63.2
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 3.2e-20 102.8 87 62.1
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 5.4e-20 102.1 78 60.3
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.6e-19 100.5 101 51.5
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 2.0e-19 100.1 90 57.8
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.0e-19 100.1 110 47.3
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.5e-19 99.4 115 49.6
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.6e-19 99.0 83 53.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 4.6e-19 99.0 77 61.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.0e-19 98.6 83 51.8
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 7.8e-19 98.2 84 51.2
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.9e-18 95.9 126 42.9
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.9e-18 95.9 116 47.4
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 5.0e-18 95.5 81 55.6
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 5.0e-18 95.5 221 50.7
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 6.6e-18 95.1 78 65.4
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 6.6e-18 95.1 115 47.8
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 8.6e-18 94.7 115 47.8
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.1e-17 94.4 115 47.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.5e-17 94.0 117 43.6
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.5e-17 93.2 115 47.8
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.5e-17 93.2 86 57.0
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.5e-17 93.2 76 55.3
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.3e-17 92.8 117 46.2
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 4.3e-17 92.4 117 45.3
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 5.6e-17 92.0 89 49.4
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 5.6e-17 92.0 76 51.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 5.6e-17 92.0 76 51.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 5.6e-17 92.0 76 51.3
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 5.6e-17 92.0 109 44.0
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 7.3e-17 91.7 120 46.7
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 7.3e-17 91.7 88 52.3
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.2e-16 90.9 108 45.4
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.2e-16 90.9 108 46.3
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.6e-16 90.5 118 43.2
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 2.1e-16 90.1 88 53.4
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.1e-16 90.1 76 52.6
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.8e-16 89.7 110 50.0
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.7e-16 89.0 117 42.7
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 4.7e-16 89.0 117 44.4
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 6.2e-16 88.6 77 57.1
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 8.0e-16 88.2 105 47.6
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 8.0e-16 88.2 81 50.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 8.0e-16 88.2 105 44.8
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 1.1e-15 87.8 80 51.2
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.4e-15 87.4 117 42.7
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.4e-15 87.4 88 50.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.3e-15 86.7 118 41.5
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 2.3e-15 86.7 73 49.3
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 2.3e-15 86.7 73 49.3
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 3.1e-15 86.3 112 43.8
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 4.0e-15 85.9 78 53.8
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.2e-15 85.5 110 43.6
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.2e-15 85.5 118 42.4
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.2e-15 85.5 76 44.7
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 8.9e-15 84.7 120 41.7
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.2e-14 84.3 87 47.1
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.0e-14 83.6 76 50.0
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.0e-14 83.6 76 50.0
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.0e-14 83.6 75 49.3
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 7.5e-14 81.6 80 50.0
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.3e-13 80.9 83 53.0
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.3e-13 80.9 110 40.9
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.7e-13 80.5 131 39.7
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.7e-13 80.5 115 40.0
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.2e-13 80.1 110 43.6
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 8.3e-13 78.2 84 46.4
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.1e-12 77.8 76 47.4
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.1e-12 77.8 85 48.2
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.9e-12 77.0 75 50.7
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 3.2e-12 76.3 113 41.6
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 3.2e-12 76.3 66 57.6
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 4.1e-12 75.9 83 45.8
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 4.1e-12 75.9 83 45.8
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.1e-12 75.9 83 44.6
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 5.4e-12 75.5 74 47.3
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 7.0e-12 75.1 92 43.5
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.2e-11 74.3 127 37.8
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.2e-11 74.3 115 39.1
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.0e-11 73.6 66 56.1
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 2.0e-11 73.6 86 43.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 3.5e-11 72.8 83 48.2
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 4.6e-11 72.4 88 42.0
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 4.6e-11 72.4 119 37.8
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.6e-11 72.4 117 39.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 6.0e-11 72.0 88 40.9
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 7.8e-11 71.6 79 48.1
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 7.8e-11 71.6 83 44.6
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.8e-11 71.6 81 40.7
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 1.0e-10 71.2 81 49.4
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.3e-10 70.9 80 41.2
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.3e-10 70.9 114 37.7
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 1.3e-10 70.9 83 44.6
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.3e-10 70.9 91 44.0
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.7e-10 70.5 113 38.9
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.3e-10 70.1 119 38.7
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.3e-10 70.1 77 46.8
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.9e-10 69.3 90 44.4
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 5.0e-10 68.9 87 42.5
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 5.0e-10 68.9 99 40.4
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.6e-10 68.6 114 37.7
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.6e-10 68.6 82 47.6
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 1.1e-09 67.8 90 40.0
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.5e-09 67.4 90 40.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.5e-09 67.4 77 42.9
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.9e-09 67.0 65 50.8
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 1.9e-09 67.0 91 41.8
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 3.3e-09 66.2 89 40.4
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 5.6e-09 65.5 76 44.7
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 7.3e-09 65.1 65 49.2
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 7.3e-09 65.1 74 45.9
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 7.3e-09 65.1 66 51.5
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 7.3e-09 65.1 75 42.7
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.5e-09 64.7 84 35.7
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.1e-08 63.5 85 36.5
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.1e-08 63.5 79 45.6
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 2.1e-08 63.5 60 50.0
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 3.6e-08 62.8 88 36.4
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 4.7e-08 62.4 96 40.6
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 8.1e-08 61.6 78 46.2
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 8.1e-08 61.6 80 42.5
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.1e-07 61.2 114 36.0
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.1e-07 61.2 79 44.3
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 1.4e-07 60.8 60 48.3
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.4e-07 60.8 80 41.2
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.8e-07 60.5 61 47.5
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.8e-07 60.5 52 46.2
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 1.8e-07 60.5 77 42.9
Duzib147G0063 Durio zibethinus HOM05D003899 ORTHO05D003655 3.1e-07 59.7 81 42.0
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 3.1e-07 59.7 45 55.6
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.0e-07 59.3 116 37.1
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.8e-07 58.5 113 37.2
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.8e-07 58.5 59 40.7
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 8.9e-07 58.2 84 34.5
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 1.2e-06 57.8 109 32.1
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.2e-06 57.8 70 45.7
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.0e-06 57.0 91 36.3
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 2.0e-06 57.0 83 42.2
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 2.6e-06 56.6 79 41.8
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 2.6e-06 56.6 53 47.2
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 2.6e-06 56.6 109 35.8
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 3.4e-06 56.2 55 41.8
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 5.8e-06 55.5 36 61.1
HPP92_002045 Vanilla planifolia HOM05D003899 ORTHO05D003655 5.8e-06 55.5 52 38.5
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.5e-06 55.1 73 42.5
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 9.9e-06 54.7 58 43.1
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 9.9e-06 54.7 81 34.6


User provided reference genes

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