Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 3.2e-90 335.1 173 100.0
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 7.6e-76 287.3 173 86.1
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.9e-57 224.2 179 70.9
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.9e-57 224.2 179 70.9
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.9e-56 221.9 180 68.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 5.1e-56 221.5 177 69.5
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.1e-56 221.5 180 68.3
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 8.7e-56 220.7 176 68.8
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.1e-55 220.3 178 68.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.5e-55 219.9 182 70.3
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.9e-55 219.5 180 70.0
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 4.3e-55 218.4 174 68.4
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 5.7e-55 218.0 178 68.5
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.1e-54 216.1 175 67.4
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.1e-54 216.1 178 70.2
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 2.8e-54 215.7 179 67.6
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 4.8e-54 214.9 183 67.2
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 4.8e-54 214.9 187 65.8
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 4.8e-54 214.9 177 66.7
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 8.2e-54 214.2 180 68.9
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 2.4e-53 212.6 182 67.6
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 4.1e-53 211.8 178 65.7
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 5.3e-53 211.5 182 67.0
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 5.3e-53 211.5 176 65.3
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 5.3e-53 211.5 176 67.0
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 9.0e-53 210.7 179 68.2
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.2e-52 210.3 176 69.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.2e-52 210.3 180 67.8
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.2e-52 210.3 176 67.0
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.2e-52 210.3 179 67.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.2e-52 210.3 173 65.9
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.2e-52 210.3 176 67.6
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.5e-52 209.9 177 67.2
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.5e-52 209.9 177 65.5
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.5e-52 209.9 180 67.2
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.6e-52 209.1 180 66.1
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 2.6e-52 209.1 179 67.0
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 4.5e-52 208.4 179 67.6
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 5.8e-52 208.0 178 67.4
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 5.8e-52 208.0 181 65.2
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 5.8e-52 208.0 178 65.2
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 5.8e-52 208.0 181 66.3
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 7.6e-52 207.6 177 63.3
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.3e-51 206.8 179 64.8
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.7e-51 206.5 180 66.7
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.7e-51 206.5 176 64.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.9e-51 205.7 177 67.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 2.9e-51 205.7 173 66.5
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 3.8e-51 205.3 183 62.8
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.0e-51 204.9 181 63.5
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 6.5e-51 204.5 178 65.7
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 8.4e-51 204.1 179 65.4
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 8.4e-51 204.1 176 64.8
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 8.4e-51 204.1 182 64.8
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-50 203.8 177 64.4
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.1e-50 203.8 176 64.2
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.1e-50 203.8 176 64.8
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.4e-50 203.4 180 66.7
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.4e-50 203.4 176 68.2
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 3.2e-50 202.2 181 61.9
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 4.2e-50 201.8 181 62.4
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 4.2e-50 201.8 177 67.8
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 5.5e-50 201.4 177 66.1
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 5.5e-50 201.4 177 66.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 9.3e-50 200.7 181 61.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 9.3e-50 200.7 177 63.8
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 9.3e-50 200.7 148 72.3
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 9.3e-50 200.7 183 65.0
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.6e-49 199.9 175 65.7
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.1e-49 199.5 179 63.1
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 2.1e-49 199.5 174 65.5
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 2.1e-49 199.5 174 65.5
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.7e-49 199.1 180 64.4
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 2.7e-49 199.1 179 62.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.5e-49 198.7 177 64.4
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 4.6e-49 198.4 175 65.1
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 4.6e-49 198.4 179 62.6
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 6.1e-49 198.0 175 65.7
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-48 197.2 179 62.6
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-48 197.2 179 62.6
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.0e-48 197.2 173 65.9
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.0e-48 197.2 174 63.8
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.0e-48 197.2 175 65.7
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.8e-48 196.4 180 63.3
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 3.0e-48 195.7 172 64.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 3.9e-48 195.3 178 65.2
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 5.1e-48 194.9 179 60.9
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 5.1e-48 194.9 179 62.0
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 5.1e-48 194.9 173 62.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.7e-48 194.5 180 66.1
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 6.7e-48 194.5 175 64.6
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 8.7e-48 194.1 180 62.8
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 8.7e-48 194.1 184 60.3
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 1.5e-47 193.4 180 62.2
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.5e-47 192.6 175 62.9
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 3.3e-47 192.2 177 64.4
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 4.3e-47 191.8 185 62.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 5.7e-47 191.4 181 60.2
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 9.7e-47 190.7 184 59.2
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.6e-46 189.9 174 64.4
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.8e-46 189.1 181 60.8
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.8e-46 189.1 181 60.8
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 4.8e-46 188.3 181 60.8
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 6.3e-46 188.0 135 72.6
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 6.3e-46 188.0 175 60.0
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 6.3e-46 188.0 180 61.1
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.1e-45 187.2 176 60.8
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.1e-45 187.2 113 81.4
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-45 185.7 190 57.4
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 6.9e-45 184.5 172 58.7
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 2.0e-44 183.0 110 79.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 2.0e-44 183.0 180 57.8
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 4.5e-44 181.8 110 80.0
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 8.5e-43 177.6 159 61.0
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.1e-42 177.2 155 60.6
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.0e-40 170.6 183 56.8
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 5.3e-37 158.3 150 65.3
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 3.4e-36 155.6 179 53.1
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 3.4e-36 155.6 179 53.1
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 7.7e-36 154.5 150 64.7
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 4.2e-34 148.7 152 61.2
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 4.2e-34 148.7 148 62.8
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 2.1e-33 146.4 111 63.1
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 3.0e-32 142.5 149 59.7
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 3.9e-32 142.1 82 78.0
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-31 140.2 149 59.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 5.0e-27 125.2 142 51.4
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 5.0e-27 125.2 74 81.1
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.1e-26 124.0 74 79.7
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-26 123.6 72 81.9
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.5e-26 121.7 74 78.4
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.4e-24 117.1 177 47.5
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.8e-24 116.7 98 60.2
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 5.2e-24 115.2 133 60.2
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.3e-22 110.5 116 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.1e-18 97.4 80 68.8
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 9.4e-18 94.4 74 63.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 3.6e-17 92.4 128 46.9
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 2.0e-15 86.7 88 56.8
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.3e-14 84.0 79 51.9
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 4.8e-14 82.0 107 54.2
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 8.3e-14 81.3 110 50.9
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 3.2e-10 69.3 108 49.1
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 5.5e-10 68.6 124 46.8
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-06 57.4 30 76.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 2.8e-06 56.2 109 44.0


User provided reference genes

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