Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 2585.1 1306 100.0
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 2013.4 1427 74.8
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1642.9 1312 66.8
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1639.4 1313 66.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1638.2 1311 67.2
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1630.9 1311 67.0
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1437.6 1237 63.4
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1286.6 1165 59.2
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1278.5 1256 55.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1236.1 1326 52.8
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1234.9 1328 52.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1231.1 1268 53.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1230.7 1322 52.2
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1207.2 1320 51.4
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1204.1 1295 53.1
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1194.9 1333 50.8
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1186.4 1329 50.4
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1181.8 1322 49.9
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1288 50.8
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1167.1 1270 50.6
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1164.1 1321 50.3
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1156.4 1322 50.2
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1148.7 1317 50.3
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1138.3 1196 53.0
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1132.9 1269 49.5
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1132.5 1303 49.0
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1123.6 1310 49.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1122.5 1321 48.3
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1114.4 1321 48.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1112.4 1321 48.2
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1097.0 1293 50.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1094.7 1224 47.9
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1088.9 1321 48.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1087.4 1224 47.2
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1086.6 1284 49.1
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1081.6 1303 48.8
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1078.9 1315 47.4
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1076.2 1302 48.5
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1075.1 1302 48.2
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 3.6e-311 1072.0 1262 47.9
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.7e-309 1064.7 1287 48.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.5e-309 1064.3 1302 47.7
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.8e-308 1062.4 1314 45.7
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.0e-306 1056.2 1246 47.2
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 6.5e-305 1051.2 1226 48.0
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.5e-304 1050.0 1225 47.0
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 3.0e-302 1042.3 1223 46.1
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 7.5e-301 1037.7 1244 46.6
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.7e-297 1026.5 1271 46.7
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.6e-293 1012.7 1223 46.9
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 3.0e-289 999.2 1225 47.3
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 7.3e-280 968.0 1316 43.5
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 3.6e-279 965.7 1309 43.9
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.1e-278 964.1 1315 45.4
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.5e-277 960.3 1292 44.0
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.3e-270 936.4 1253 44.9
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 6.8e-270 934.9 1302 43.8
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.4e-269 932.2 1319 43.7
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 7.6e-269 931.4 1215 44.9
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.4e-268 927.9 1117 47.5
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 4.6e-266 922.2 1207 44.3
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 3.9e-265 919.1 1317 43.5
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.6e-263 913.7 1225 44.2
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.6e-261 904.8 1155 45.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.8e-260 902.5 1300 42.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 8.4e-260 901.4 1298 43.3
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.4e-254 884.0 1195 43.5
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.6e-253 879.8 1185 43.9
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.3e-252 877.5 1246 44.5
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.7e-252 877.1 1184 45.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 3.8e-252 875.9 1149 44.7
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 7.1e-243 845.1 1239 41.7
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 6.2e-239 832.0 1182 43.1
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 8.4e-236 821.6 1218 41.6
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 6.1e-226 788.9 1118 42.6
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.6e-221 773.5 1257 39.7
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 7.4e-216 755.4 1253 39.8
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.4e-211 741.1 1061 42.3
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 7.2e-211 738.8 1295 38.5
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 6.7e-209 732.3 1156 39.4
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 8.8e-201 705.3 1225 37.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.1e-198 698.4 1281 37.5
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 4.5e-197 693.0 693 56.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.0e-192 677.6 1217 36.6
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 7.0e-190 669.1 885 45.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.2e-189 668.3 1136 38.5
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.5e-187 661.4 653 56.5
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 4.1e-182 643.3 620 55.2
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.4e-182 642.9 1156 37.9
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-181 641.7 1229 36.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 3.7e-175 620.2 611 55.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 2.5e-171 607.4 1176 36.1
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.6e-170 604.7 1189 35.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 4.1e-166 590.1 1170 34.7
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 9.2e-166 589.0 546 56.4
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 8.4e-151 539.3 701 46.8
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 6.6e-140 503.1 604 48.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.2e-127 461.5 774 36.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-124 452.2 611 46.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.0e-108 399.4 612 43.5
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.3e-106 392.5 722 37.1
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.7e-103 382.1 799 37.0
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.9e-103 381.3 743 36.9
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.8e-98 364.0 831 31.8
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.4e-97 362.5 573 41.5
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 5.0e-95 354.0 672 37.5
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.4e-94 352.4 822 30.5
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 6.1e-93 347.1 364 50.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.1e-69 268.9 802 28.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.3e-68 265.4 580 32.1
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 9.8e-67 260.0 385 40.3
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.3e-46 191.8 293 40.3
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.1e-41 176.8 163 55.8
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 9.2e-41 173.7 291 33.7
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.9e-25 122.9 212 38.2
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 4.2e-25 121.7 405 31.4
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 4.2e-25 121.7 369 33.3
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.6e-24 119.8 368 26.9
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.9e-20 104.4 371 25.6
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.5e-19 103.2 244 36.1
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.6e-19 102.4 204 36.3
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 2.6e-19 102.4 162 35.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.9e-15 88.6 224 32.1
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 5.1e-15 88.2 220 35.0
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 6.7e-15 87.8 270 30.4
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.5e-14 85.9 184 34.2
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.4e-12 80.1 337 24.6
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.9e-10 72.4 316 29.4
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 8.4e-10 70.9 329 21.0
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.2e-09 68.9 135 32.6
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 9.3e-09 67.4 383 25.3
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.4e-06 57.8 90 40.0


User provided reference genes

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