Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 9.2e-39 162.9 74 100.0
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.1e-23 110.2 78 71.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.8e-22 106.7 78 70.5
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-21 106.3 78 70.5
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.9e-21 104.4 61 82.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 3.9e-21 104.4 77 68.8
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.1e-21 104.0 72 73.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.1e-21 104.0 72 73.6
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.1e-21 104.0 72 72.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.1e-21 104.0 77 66.2
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 5.1e-21 104.0 72 72.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.6e-21 103.6 72 72.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.6e-21 103.6 72 72.2
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.7e-21 103.2 61 80.3
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.7e-21 103.2 61 82.0
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 8.7e-21 103.2 61 82.0
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 8.7e-21 103.2 61 82.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 8.7e-21 103.2 61 82.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.1e-20 102.8 61 80.3
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.1e-20 102.8 77 67.5
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.1e-20 102.8 77 68.8
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.5e-20 102.4 61 82.0
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.5e-20 102.4 72 70.8
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.5e-20 102.4 74 74.3
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.9e-20 102.1 72 70.8
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.9e-20 102.1 61 80.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.5e-20 101.7 61 80.3
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.5e-20 101.7 61 80.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 3.3e-20 101.3 61 78.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.3e-20 101.3 60 81.7
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 4.3e-20 100.9 73 69.9
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.3e-20 100.9 77 67.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.3e-20 100.9 73 71.2
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 5.6e-20 100.5 61 78.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.6e-20 100.5 72 70.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.6e-20 100.5 72 69.4
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.3e-20 100.1 61 78.7
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 7.3e-20 100.1 61 78.7
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.3e-20 100.1 61 80.3
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 7.3e-20 100.1 61 78.7
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 7.3e-20 100.1 61 78.7
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 7.3e-20 100.1 61 78.7
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.6e-20 99.8 60 80.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 78.7
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 9.6e-20 99.8 60 80.0
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 9.6e-20 99.8 60 80.0
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 9.6e-20 99.8 61 77.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.3e-19 99.4 60 80.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-19 99.4 60 80.0
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.3e-19 99.4 61 78.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.3e-19 99.4 61 78.7
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.6e-19 99.0 61 77.0
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.6e-19 99.0 73 68.5
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.1e-19 98.6 61 77.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.1e-19 98.6 61 77.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.1e-19 98.6 61 77.0
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.1e-19 98.6 61 77.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 2.1e-19 98.6 61 77.0
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.1e-19 98.6 74 66.2
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.8e-19 98.2 61 78.7
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.8e-19 98.2 61 75.4
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.6e-19 97.8 76 65.8
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 3.6e-19 97.8 61 77.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 3.6e-19 97.8 61 75.4
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.2e-19 97.1 61 77.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 6.2e-19 97.1 61 75.4
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 8.1e-19 96.7 61 77.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 8.1e-19 96.7 61 77.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-18 96.3 61 75.4
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.1e-18 96.3 61 77.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.1e-18 96.3 61 77.0
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.1e-18 96.3 61 75.4
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.1e-18 96.3 61 73.8
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.4e-18 95.9 76 63.2
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.4e-18 95.9 77 62.3
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.4e-18 95.9 81 63.0
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.4e-18 95.9 77 63.6
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.4e-18 95.9 77 63.6
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.8e-18 95.5 78 61.5
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.8e-18 95.5 76 63.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-18 95.5 78 61.5
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-18 95.5 76 63.2
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.8e-18 95.5 76 63.2
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.8e-18 95.5 78 61.5
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.8e-18 95.5 61 75.4
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.8e-18 95.5 61 75.4
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.8e-18 95.5 61 75.4
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.8e-18 95.5 61 75.4
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.8e-18 95.5 61 73.8
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.4e-18 95.1 74 64.9
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.4e-18 95.1 74 64.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.4e-18 95.1 61 72.1
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.1e-18 94.7 61 73.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 5.3e-18 94.0 76 61.8
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 5.3e-18 94.0 76 61.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.3e-18 94.0 76 61.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 5.3e-18 94.0 76 61.8
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 5.3e-18 94.0 76 61.8
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.9e-18 93.6 61 72.1
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 9.0e-18 93.2 61 72.1
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 9.0e-18 93.2 61 72.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 9.0e-18 93.2 61 72.1
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-17 92.8 61 72.1
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-17 92.8 61 72.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.2e-17 92.8 76 61.8
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-17 92.8 61 72.1
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.5e-17 92.4 60 73.3
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.5e-17 92.4 60 73.3
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.0e-17 92.0 61 72.1
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.6e-17 91.7 61 72.1
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.4e-17 91.3 60 70.0
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.5e-17 90.9 61 72.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.8e-17 90.5 61 70.5
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.8e-17 90.5 61 70.5
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 7.6e-17 90.1 60 71.7
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.9e-17 89.7 60 71.7
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 9.9e-17 89.7 59 69.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.9e-17 89.7 77 61.0
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.4e-16 87.0 59 69.5
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 8.4e-16 86.7 60 66.7
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.4e-16 86.7 60 68.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.1e-15 83.6 64 67.2
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 9.3e-15 83.2 77 58.4
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-14 82.4 63 68.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-14 81.3 54 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 2.5e-12 75.1 60 61.7
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.3e-12 74.3 60 63.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.8e-11 71.6 61 57.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.4e-10 68.6 61 57.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.4e-09 64.7 72 47.2
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.5e-07 58.5 44 68.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.7e-06 55.1 61 47.5


User provided reference genes

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