Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.1e-177 625.5 311 100.0
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 7.6e-143 510.8 310 81.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.9e-142 508.1 310 81.6
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 9.3e-141 503.8 309 79.6
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 5.6e-138 494.6 309 79.0
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.5e-135 485.0 338 72.8
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.3e-134 483.4 310 80.6
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.5e-130 469.2 311 76.8
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 8.1e-129 464.2 309 73.5
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 2.6e-127 459.1 310 74.2
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 3.4e-127 458.8 310 74.2
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.0e-126 457.2 309 72.2
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.7e-126 456.4 310 72.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.2e-126 456.1 309 72.5
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 6.4e-126 454.5 309 71.8
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 6.4e-126 454.5 309 71.5
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.2e-125 452.2 310 72.6
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 9.3e-125 450.7 309 70.6
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 9.3e-125 450.7 309 70.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.6e-124 449.9 310 70.3
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.6e-124 449.9 309 72.2
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.7e-124 449.1 309 70.6
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.5e-124 448.7 309 70.6
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 6.0e-124 448.0 260 82.3
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 7.9e-124 447.6 309 71.2
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 1.8e-123 446.4 309 70.2
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 3.0e-123 445.7 310 70.3
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.0e-123 445.7 311 71.7
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.9e-123 445.3 310 70.3
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 6.7e-123 444.5 309 69.3
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.3e-122 442.2 309 69.9
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.6e-122 441.4 310 69.7
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 7.4e-122 441.0 339 65.8
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 9.6e-122 440.7 286 74.8
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.1e-121 439.5 311 70.4
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 6.2e-121 438.0 309 70.9
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 8.2e-121 437.6 314 68.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.4e-120 436.8 313 68.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 3.1e-120 435.6 307 71.3
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 3.1e-120 435.6 310 69.0
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 6.9e-120 434.5 311 69.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 2.0e-119 433.0 312 70.2
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.6e-119 431.0 314 68.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 7.6e-119 431.0 311 70.1
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.2e-118 429.5 309 69.9
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 8.4e-118 427.6 309 66.7
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.1e-117 427.2 311 69.5
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.4e-117 426.8 307 68.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.4e-117 426.8 309 70.2
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 2.5e-117 426.0 312 67.9
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 3.2e-117 425.6 309 66.0
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.2e-117 425.6 314 66.9
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 9.3e-117 424.1 321 66.4
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 9.3e-117 424.1 309 67.0
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 2.1e-116 422.9 311 67.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 4.6e-116 421.8 307 67.8
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.3e-115 420.2 302 69.5
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.9e-114 416.4 311 67.8
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.3e-114 415.2 309 67.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 9.7e-114 414.1 309 69.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.3e-113 413.7 300 68.3
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.7e-113 412.1 309 68.3
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 6.3e-113 411.4 313 66.1
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.1e-112 410.6 309 68.0
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.4e-112 410.2 309 67.3
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.3e-112 408.3 309 63.1
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 9.0e-112 407.5 300 67.7
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.2e-111 407.1 310 66.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.2e-111 407.1 309 65.0
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.2e-111 407.1 294 68.0
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 7.7e-111 404.4 265 72.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.0e-110 404.1 260 72.7
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 3.8e-110 402.1 260 73.5
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 3.8e-110 402.1 260 73.5
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 8.5e-110 401.0 303 66.7
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 7.2e-109 397.9 343 59.5
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.1e-108 394.8 280 68.9
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.4e-107 393.7 259 71.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 6.7e-107 391.3 271 70.1
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 8.8e-107 391.0 310 63.9
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.5e-106 390.2 260 72.7
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.0e-106 389.8 260 73.1
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 7.4e-106 387.9 290 66.6
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 6.3e-105 384.8 260 72.3
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 6.3e-105 384.8 260 71.2
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 2.4e-104 382.9 260 71.5
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 5.3e-104 381.7 260 70.4
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 9.1e-104 380.9 301 65.8
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 4.5e-103 378.6 314 61.8
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 4.5e-103 378.6 260 71.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 4.5e-103 378.6 319 59.9
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 5.9e-103 378.3 281 66.5
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 2.2e-102 376.3 261 69.7
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.2e-102 376.3 289 63.3
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 2.5e-101 372.9 304 61.8
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 9.4e-101 370.9 281 64.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.2e-100 370.5 233 74.7
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.1e-98 364.0 289 61.2
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.5e-98 363.6 277 62.8
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.8e-97 358.6 239 70.3
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.1e-96 355.5 238 72.3
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.3e-96 355.1 233 71.2
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 7.0e-96 354.8 309 59.5
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 3.5e-95 352.4 234 72.6
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 3.5e-95 352.4 305 58.4
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.1e-92 341.7 288 58.7
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 6.7e-91 338.2 288 56.2
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.6e-90 336.3 304 56.2
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 3.3e-90 335.9 304 55.9
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 9.7e-90 334.3 304 55.6
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.8e-89 332.8 304 55.6
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.8e-89 332.8 263 65.4
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 3.7e-89 332.4 304 55.9
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 3.7e-89 332.4 304 55.9
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.1e-88 330.9 304 58.9
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 1.4e-88 330.5 263 65.0
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 4.1e-88 328.9 259 59.5
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 4.1e-88 328.9 304 55.3
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 7.0e-88 328.2 304 54.9
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 7.2e-85 318.2 290 59.3
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 3.6e-84 315.8 290 59.0
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.3e-83 313.2 262 56.1
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.0e-82 310.1 233 67.8
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.6e-82 309.7 278 57.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.7e-81 307.0 243 65.4
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.8e-81 305.4 238 60.1
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.1e-80 302.8 284 52.1
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 4.1e-80 302.4 347 49.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.6e-79 300.4 261 54.4
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.3e-78 297.4 311 53.1
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.0e-75 287.7 205 67.3
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.2e-74 284.3 260 51.5
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 8.3e-73 278.1 310 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.2e-71 274.2 268 52.6
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.1e-69 267.7 222 61.7
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 9.5e-69 264.6 300 47.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.4e-67 260.8 293 46.1
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.3e-67 260.0 191 64.9
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 2.7e-63 246.5 270 53.0
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.9e-57 225.7 241 48.5
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.2e-52 208.8 118 80.5
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.1e-43 181.4 118 72.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.0e-42 177.2 119 63.9
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.0e-42 177.2 119 63.9
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.2e-39 167.9 94 80.9
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 8.6e-38 161.8 94 79.8
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.6e-36 157.5 258 33.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.1e-35 154.8 263 35.4
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.9e-33 146.7 129 58.1
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 9.6e-29 131.7 297 30.3
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 1.4e-24 117.9 247 32.8
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 7.9e-23 112.1 67 77.6
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 3.0e-14 83.6 75 54.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 5.1e-14 82.8 156 35.3
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.1e-11 73.6 120 37.5


User provided reference genes

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