Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 2337.8 1208 100.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1976.8 1206 83.5
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1947.9 1206 82.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1904.4 1182 82.9
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1841.6 1207 77.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1832.4 1209 76.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1821.6 1293 76.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1787.3 1206 75.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1783.5 1202 75.4
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1783.1 1209 75.8
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1776.1 1205 75.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1775.0 1202 75.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1771.9 1209 75.0
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1770.7 1173 77.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1769.6 1202 74.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1759.2 1203 75.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1756.9 1201 74.2
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1755.0 1206 74.0
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1754.2 1206 74.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1751.9 1210 73.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1748.8 1206 74.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1745.7 1207 72.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1744.9 1208 74.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1739.2 1210 73.7
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1738.8 1203 73.9
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1729.9 1203 72.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1727.6 1203 72.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1725.3 1203 72.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1722.6 1203 72.6
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1719.5 1203 72.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1714.5 1207 72.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1714.1 1202 72.4
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1713.4 1201 72.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1712.6 1203 72.2
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1711.0 1208 73.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1710.3 1203 73.4
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1709.9 1180 73.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1708.0 1213 71.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1704.1 1212 72.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1698.3 1208 72.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1695.6 1205 72.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1695.2 1205 71.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1684.1 1205 69.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1681.8 1209 70.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1677.5 1206 71.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1674.4 1210 70.3
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1663.7 1205 70.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1656.3 1208 69.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1207 69.9
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1649.8 1205 69.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 1205 71.2
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1646.7 1200 69.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1215 69.1
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1159 71.5
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1207 69.2
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1623.2 1210 68.8
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1205 67.6
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1615.1 1205 68.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1612.8 1210 68.1
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1611.7 1207 67.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1206 70.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1609.7 1217 67.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1607.8 1206 69.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1600.1 1205 67.5
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1200 68.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1207 67.9
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1588.5 1207 67.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1586.2 1204 67.2
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1582.8 1167 69.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1581.2 1260 66.3
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1206 67.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1213 67.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1570.4 1205 67.1
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1570.1 1208 67.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1569.7 1204 66.6
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1567.4 1204 66.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1209 67.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1205 66.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1562.4 1205 66.6
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1561.2 1211 68.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1556.6 1200 66.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1549.3 1206 66.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1200 65.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1536.9 1191 65.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1528.8 1185 66.6
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1521.5 1119 68.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1182 65.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1515.0 1191 65.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1506.5 1193 64.9
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1496.5 992 77.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1483.0 1205 63.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1457.2 1214 62.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1139 65.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1419.1 1202 61.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1404.8 1208 59.9
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1385.5 1020 68.1
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1369.8 1188 61.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1222 59.2
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1355.9 1144 61.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1355.5 1209 60.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1296.2 1053 64.8
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1184.9 961 65.5
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1179.9 821 74.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1141.7 889 65.0
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1129.4 835 70.8
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 3.8e-307 1058.5 1152 52.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.4e-272 943.7 1241 44.8
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.7e-271 938.3 1233 42.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.0e-269 931.4 1241 42.5
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 7.0e-261 904.8 648 71.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 4.7e-249 865.5 1185 43.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.1e-240 836.3 1212 40.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.5e-239 833.9 1159 43.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-238 830.5 1171 43.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.4e-237 826.6 600 73.5
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 4.6e-236 822.4 1159 42.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.9e-222 776.5 799 53.2
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-217 760.4 1065 44.3
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 7.1e-213 745.3 1235 38.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.4e-202 708.8 572 63.5
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.0e-190 671.8 637 54.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.7e-187 658.7 541 62.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.8e-171 607.8 471 69.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.2e-165 585.9 418 71.5
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.0e-147 527.3 486 55.8
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.8e-132 477.6 322 78.6
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.9e-121 440.3 298 78.5
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.1e-84 318.5 210 78.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 7.6e-82 310.1 1409 23.9
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 6.5e-73 280.4 189 79.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.1e-72 279.6 210 64.8
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.5e-72 277.3 267 54.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.6e-55 222.6 217 55.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.8e-49 201.4 435 32.2
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.1e-48 199.9 464 32.5
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.5e-45 189.5 109 87.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.8e-36 157.9 1167 21.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.1e-27 130.2 96 71.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 2.6e-21 109.0 84 65.5
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.0e-17 94.7 339 27.4
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 9.5e-16 90.5 86 55.8
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.0e-15 87.4 73 60.3
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.3e-14 85.9 79 55.7
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-13 82.8 63 66.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 9.8e-13 80.5 69 59.4
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.4e-12 77.8 76 50.0
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.1e-11 77.0 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.1e-11 77.0 50 80.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.4e-11 76.6 74 58.1
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-10 73.2 64 59.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.1e-10 72.8 71 53.5
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 3.5e-10 72.0 88 50.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 4.6e-10 71.6 64 57.8
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.5e-08 66.6 182 28.6
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 2.5e-08 65.9 108 39.8
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 5.6e-08 64.7 84 46.4
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 9.5e-08 63.9 62 58.1
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 4.7e-07 61.6 122 33.6
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 6.2e-07 61.2 319 23.8
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 8.9e-06 57.4 36 75.0


User provided reference genes

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