Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 2.1e-169 599.0 302 100.0
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 2.8e-81 306.2 172 91.3
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 7.0e-77 291.6 175 84.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 2.0e-76 290.0 175 83.4
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.9e-74 283.5 175 81.1
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 5.8e-71 271.9 175 78.3
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 7.5e-71 271.6 175 77.1
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 7.5e-71 271.6 175 78.3
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 2.9e-70 269.6 173 78.0
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 1.6e-68 263.8 175 77.1
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 2.7e-68 263.1 175 75.4
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 3.5e-68 262.7 174 75.9
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 4.6e-68 262.3 175 74.9
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 6.0e-68 261.9 175 76.0
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.3e-67 260.8 175 77.1
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 3.0e-67 259.6 175 74.3
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 3.9e-67 259.2 172 78.5
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 5.0e-67 258.8 175 77.1
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 8.6e-67 258.1 168 76.8
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 1.5e-66 257.3 179 75.4
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.5e-66 257.3 175 75.4
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 1.5e-66 257.3 175 76.0
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 3.3e-66 256.1 175 74.3
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 3.3e-66 256.1 173 76.9
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 7.3e-66 255.0 176 75.0
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 9.5e-66 254.6 172 77.9
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 2.1e-65 253.4 168 78.0
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 3.6e-65 252.7 169 76.9
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 4.7e-65 252.3 176 72.7
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 8.1e-65 251.5 172 77.3
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 1.8e-64 250.4 176 74.4
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 3.1e-64 249.6 175 77.1
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 5.2e-64 248.8 171 76.6
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 2.6e-63 246.5 172 71.5
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 3.4e-63 246.1 172 70.3
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 4.4e-63 245.7 177 70.6
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 4.4e-63 245.7 175 75.4
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 1.3e-62 244.2 175 72.6
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.7e-62 243.8 172 75.0
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 1.7e-62 243.8 175 74.3
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.7e-62 243.8 175 74.9
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 2.2e-62 243.4 182 68.1
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.9e-62 243.0 175 74.3
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 2.9e-62 243.0 176 71.0
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.7e-62 242.7 175 74.9
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.4e-61 240.7 176 73.9
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 2.4e-61 240.0 175 68.0
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 3.2e-61 239.6 176 73.3
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 4.1e-61 239.2 179 69.3
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 7.1e-61 238.4 225 60.0
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 1.6e-60 237.3 175 72.0
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 2.7e-60 236.5 175 70.9
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 2.7e-60 236.5 169 72.2
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 6.0e-60 235.3 175 66.9
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.0e-59 234.6 169 71.6
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 1.7e-59 233.8 175 70.3
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 2.3e-59 233.4 182 66.5
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 2.3e-59 233.4 176 71.0
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 6.6e-59 231.9 173 67.1
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 8.6e-59 231.5 175 72.6
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.1e-58 231.1 173 69.9
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.5e-58 230.7 152 77.0
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 1.9e-58 230.3 175 70.3
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 3.3e-58 229.6 175 70.3
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 6.2e-57 225.3 175 65.7
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 8.9e-56 221.5 176 69.3
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 8.9e-56 221.5 176 64.2
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 1.5e-55 220.7 175 65.1
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 2.6e-55 219.9 177 63.8
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 3.4e-55 219.5 171 67.3
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 5.8e-55 218.8 175 63.4
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 5.8e-55 218.8 175 63.4
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 7.6e-55 218.4 176 64.2
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.6e-55 218.4 176 64.2
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.6e-55 218.4 176 64.2
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 6.4e-54 215.3 175 63.4
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 3.2e-53 213.0 177 63.8
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 4.1e-53 212.6 177 63.8
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 2.1e-52 210.3 175 62.9
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 1.7e-51 207.2 158 67.7
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 2.3e-51 206.8 177 61.6
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 6.6e-51 205.3 162 67.3
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 2.5e-50 203.4 170 61.2
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 7.3e-50 201.8 173 61.3
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.2e-49 201.1 171 61.4
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 1.1e-48 198.0 179 62.6
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 4.4e-47 192.6 124 76.6
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 7.6e-47 191.8 136 72.8
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.7e-46 190.7 135 72.6
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 3.5e-44 183.0 171 53.8
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 8.7e-43 178.3 156 56.4
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 3.6e-41 172.9 135 66.7
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.9e-38 162.5 104 80.8
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.9e-38 162.5 104 80.8
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.3e-35 154.5 168 50.6
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 1.7e-35 154.1 143 53.8
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 5.6e-34 149.1 94 76.6
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.4e-32 144.4 298 36.2
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 9.0e-32 141.7 104 72.1
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 1.6e-28 131.0 143 46.2
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 2.8e-17 93.6 149 37.6
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 4.8e-17 92.8 64 76.6
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 8.2e-09 65.5 142 31.0
Eucgr.C00726 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.3e-08 62.8 60 58.3
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 1.5e-07 61.2 71 52.1
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 3.8e-06 56.6 40 67.5
TAR636G2498 Trochodendron aralioides HOM05D007323 ORTHO05D009238 3.8e-06 56.6 67 47.8


User provided reference genes

Program Settings