Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 0.0e+00 1143.3 540 100.0
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.6e-281 972.2 538 84.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 7.4e-279 963.4 540 83.9
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.8e-277 958.7 540 83.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 4.5e-276 954.1 540 83.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 6.5e-275 950.3 587 77.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.0e-272 941.4 531 82.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.2e-270 935.3 538 82.0
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.3e-264 915.2 564 77.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 4.4e-263 911.0 624 71.8
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 9.7e-263 909.8 531 79.7
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.0e-260 902.1 451 92.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 3.8e-259 897.9 544 78.7
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 3.8e-259 897.9 540 80.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.7e-252 873.6 451 90.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.3e-251 872.8 453 89.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-251 872.5 453 89.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 4.2e-250 867.8 453 90.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.6e-249 865.9 453 89.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.6e-249 864.8 451 89.6
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.0e-248 863.2 448 89.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.6e-247 858.6 450 90.0
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.6e-247 858.6 543 76.8
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.5e-247 857.1 453 87.6
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 9.8e-247 856.7 453 88.7
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.7e-246 855.9 453 88.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 8.3e-246 853.6 453 88.1
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.1e-245 851.7 453 87.0
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 9.2e-245 850.1 448 89.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 9.2e-245 850.1 448 89.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 9.2e-245 850.1 451 90.0
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.7e-244 848.6 448 88.2
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.7e-244 848.6 453 87.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 3.5e-244 848.2 453 87.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 3.5e-244 848.2 450 86.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.9e-244 847.4 451 89.4
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-243 846.3 448 87.3
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.8e-243 844.7 444 89.9
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 8.6e-243 843.6 450 89.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-242 843.2 450 88.2
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-242 842.8 463 85.1
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.5e-242 842.8 453 86.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.5e-242 842.0 448 86.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 5.6e-242 840.9 451 88.2
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 5.6e-242 840.9 489 81.0
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 7.3e-242 840.5 451 85.8
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 9.5e-242 840.1 451 87.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.6e-241 839.3 451 88.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.1e-241 839.0 451 86.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 6.1e-241 837.4 447 87.5
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 6.1e-241 837.4 453 86.5
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 8.0e-241 837.0 448 86.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.8e-240 835.9 451 86.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 2.3e-240 835.5 448 87.1
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.3e-240 835.5 453 87.0
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.0e-240 834.7 453 86.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.8e-240 833.9 453 86.3
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.2e-239 833.2 452 85.6
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.5e-239 832.8 446 86.5
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 3.4e-239 831.6 442 87.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 4.4e-239 831.2 450 87.6
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 7.5e-239 830.5 451 85.6
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.9e-238 828.6 447 86.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 4.9e-238 827.8 451 85.8
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 8.3e-238 827.0 451 86.0
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.0e-237 823.9 453 84.3
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.6e-236 822.8 452 83.8
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.6e-236 822.8 540 74.6
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.0e-236 822.4 452 84.1
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.7e-236 822.0 453 85.0
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.7e-236 822.0 453 84.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.7e-236 822.0 453 84.1
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.5e-236 821.6 446 86.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.5e-236 821.6 447 84.8
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.6e-236 821.2 452 83.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.6e-236 821.2 451 85.8
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 5.9e-236 820.8 447 85.2
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.9e-235 818.1 449 85.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 6.6e-235 817.4 447 84.1
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-234 816.6 452 83.6
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.1e-234 816.6 451 84.7
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.9e-234 815.8 453 83.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.9e-234 815.8 453 83.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.9e-234 815.8 453 83.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.3e-234 815.1 448 84.6
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.3e-234 814.7 453 83.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.8e-233 812.0 469 81.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.6e-233 811.6 453 83.9
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.8e-232 809.3 453 83.0
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.3e-232 808.9 452 82.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.2e-232 807.7 453 83.0
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 8.9e-232 807.0 443 84.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.6e-231 805.4 483 79.3
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.7e-230 802.7 453 82.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.9e-230 802.0 448 83.3
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 8.3e-230 800.4 451 80.7
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.3e-230 800.4 486 78.6
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 7.0e-229 797.3 451 80.5
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.3e-227 793.1 447 82.6
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 5.0e-227 791.2 452 81.9
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.9e-226 789.3 452 81.4
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 3.3e-226 788.5 452 81.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.3e-226 788.1 452 81.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.3e-226 788.1 452 81.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-224 782.7 452 81.2
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.3e-224 782.3 412 88.3
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.9e-221 772.7 448 79.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-216 756.9 446 81.2
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 4.4e-215 751.5 452 78.5
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.6e-209 731.9 449 76.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.0e-207 726.1 380 88.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.6e-207 725.7 457 77.2
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.9e-206 722.2 447 75.8
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 8.1e-201 704.1 448 73.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.3e-200 701.4 464 74.8
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.1e-197 693.7 388 82.5
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.3e-197 690.6 377 83.8
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.1e-195 684.9 548 63.5
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-194 683.7 446 74.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-189 666.4 455 73.4
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.7e-179 631.3 334 89.2
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.2e-166 589.7 434 68.7
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.4e-160 570.5 294 91.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.8e-158 562.4 316 78.8
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.0e-156 554.7 295 88.5
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-147 526.9 288 83.7
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.8e-137 493.0 451 58.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.5e-125 454.1 379 58.6
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.2e-123 445.7 295 70.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.6e-108 397.5 280 68.6
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.4e-88 330.5 194 75.8
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 4.0e-83 313.2 162 88.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.9e-73 279.6 270 51.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-70 270.8 153 79.1
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-68 264.6 140 88.6
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.8e-68 263.8 153 75.2
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.2e-68 262.7 148 79.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 2.4e-67 260.8 198 67.2
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 2.0e-66 257.7 147 79.6
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.3e-64 248.8 146 79.5
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.5e-61 241.5 156 69.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.7e-52 211.5 135 75.6
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.1e-51 208.8 138 71.7
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.3e-49 201.8 111 85.6
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.4e-43 181.8 117 72.6
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 7.0e-43 179.5 201 49.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.5e-34 150.2 73 93.2
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.4e-29 133.7 76 78.9
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-29 132.5 75 78.7
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.7e-26 124.4 68 79.4
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.9e-26 123.2 73 78.1
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.5e-25 119.8 71 74.6
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.6e-23 115.2 55 92.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.6e-23 114.0 75 69.3
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 3.7e-20 104.0 72 63.9
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 8.6e-17 92.8 55 70.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.1e-15 88.2 71 57.7
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.0e-14 85.9 45 77.8
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-14 85.9 49 73.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.0e-14 85.9 67 58.2
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 8.6e-09 66.2 36 80.6
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 8.9e-06 56.2 61 52.5


User provided reference genes

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