Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0095700 Rhododendron simsii HOM05D001896 ORTHO05D001862 8.1e-85 317.0 156 100.0
Rhsim10G0095600 Rhododendron simsii HOM05D001896 ORTHO05D001862 4.9e-58 228.0 141 82.3
Thecc.01G074600 Theobroma cacao HOM05D001896 ORTHO05D001862 3.1e-20 102.4 150 39.3
TAR625G0391 Trochodendron aralioides HOM05D001896 ORTHO05D001862 7.0e-20 101.3 145 42.1
Duzib147G1417 Durio zibethinus HOM05D001896 ORTHO05D001862 9.1e-20 100.9 150 40.7
Peaxi162Scf00449g00045 Petunia axillaris HOM05D001896 ORTHO05D001862 1.7e-18 96.7 146 43.2
Nitab4.5_0000142g0290 Nicotiana tabacum HOM05D001896 ORTHO05D001862 2.2e-18 96.3 138 44.9
Nitab4.5_0003129g0080 Nicotiana tabacum HOM05D001896 ORTHO05D001862 3.8e-18 95.5 138 44.2
CiPaw.02G001600 Carya illinoinensis HOM05D001896 ORTHO05D001862 5.0e-18 95.1 146 42.5
RcHm_v2.0_Chr2g0108431 Rosa chinensis HOM05D001896 ORTHO05D001862 2.5e-17 92.8 136 41.2
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 1.2e-16 90.5 142 38.7
QL06p039341 Quercus lobata HOM05D001896 ORTHO05D001862 1.2e-16 90.5 150 40.0
Solyc02g092190.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 1.6e-16 90.1 152 42.1
Sopen02g036760 Solanum pennellii HOM05D001896 ORTHO05D001862 1.6e-16 90.1 152 42.1
MD02G1188200 Malus domestica HOM05D001896 ORTHO05D001862 2.1e-16 89.7 150 41.3
TAR628G1651 Trochodendron aralioides HOM05D001896 ORTHO05D001862 4.7e-16 88.6 140 41.4
Lj4P164T35 Lonicera japonica HOM05D001896 ORTHO05D001862 8.0e-16 87.8 137 42.3
COL.COLO4_11600 Corchorus olitorius HOM05D001896 ORTHO05D001862 1.4e-15 87.0 150 39.3
Duzib264G0605 Durio zibethinus HOM05D001896 ORTHO05D001862 2.3e-15 86.3 138 39.9
FvH4_1g17980 Fragaria vesca HOM05D001896 ORTHO05D001862 2.3e-15 86.3 157 40.1
FAN19G1457 Fragaria x ananassa HOM05D001896 ORTHO05D001862 3.0e-15 85.9 157 40.1
FAN23G2360 Fragaria x ananassa HOM05D001896 ORTHO05D001862 3.0e-15 85.9 157 38.9
FAN26G2644 Fragaria x ananassa HOM05D001896 ORTHO05D001862 3.0e-15 85.9 157 38.9
Gohir.A11G213300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.0e-15 85.9 150 37.3
PGSC0003DMG400021411 Solanum tuberosum HOM05D001896 ORTHO05D001862 6.7e-15 84.7 151 38.4
Eucgr.L02595 Eucalyptus grandis HOM05D001896 ORTHO05D001862 1.1e-14 84.0 157 40.1
MD15G1299400 Malus domestica HOM05D001896 ORTHO05D001862 1.5e-14 83.6 137 42.3
Gohir.D11G209900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.6e-14 82.8 150 35.3
Gorai.007G225100 Gossypium raimondii HOM05D001896 ORTHO05D001862 2.6e-14 82.8 150 35.3
Gohir.A02G150400 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.3e-14 82.4 137 40.1
CiPaw.01G002900 Carya illinoinensis HOM05D001896 ORTHO05D001862 4.4e-14 82.0 147 36.1
Lj7P110T16 Lonicera japonica HOM05D001896 ORTHO05D001862 4.4e-14 82.0 137 43.8
Nn6g34510 Nelumbo nucifera HOM05D001896 ORTHO05D001862 4.4e-14 82.0 136 41.9
Rhsim08G0092500 Rhododendron simsii HOM05D001896 ORTHO05D001862 4.4e-14 82.0 135 40.0
Dinv23033 Davidia involucrata HOM05D001896 ORTHO05D001862 5.7e-14 81.6 108 48.1
Cfa004148 Carpinus fangiana HOM05D001896 ORTHO05D001862 7.4e-14 81.3 153 37.9
Nitab4.5_0003129g0070 Nicotiana tabacum HOM05D001896 ORTHO05D001862 7.4e-14 81.3 151 40.4
Nitab4.5_0000142g0300 Nicotiana tabacum HOM05D001896 ORTHO05D001862 9.7e-14 80.9 155 38.1
CAN.G1075.50 Capsicum annuum HOM05D001896 ORTHO05D001862 1.7e-13 80.1 150 36.7
Actinidia32848 Actinidia chinensis HOM05D001896 ORTHO05D001862 2.2e-13 79.7 134 42.5
Gohir.D03G029900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.7e-13 79.0 139 41.7
Gorai.003G031600 Gossypium raimondii HOM05D001896 ORTHO05D001862 4.8e-13 78.6 139 41.0
Peaxi162Scf00548g00211 Petunia axillaris HOM05D001896 ORTHO05D001862 4.8e-13 78.6 138 38.4
Dinv44941 Davidia involucrata HOM05D001896 ORTHO05D001862 6.3e-13 78.2 142 38.7
TAR381G1204 Trochodendron aralioides HOM05D001896 ORTHO05D001862 6.3e-13 78.2 138 39.9
Manes.12G116200 Manihot esculenta HOM05D001896 ORTHO05D001862 1.1e-12 77.4 148 34.5
Oeu048568.1 Olea europaea HOM05D001896 ORTHO05D001862 1.1e-12 77.4 137 38.0
Eucgr.I00689 Eucalyptus grandis HOM05D001896 ORTHO05D001862 2.4e-12 76.3 136 39.7
Atru.chr3.1040 Acer truncatum HOM05D001896 ORTHO05D001862 5.3e-12 75.1 149 36.9
GSVIVG01009317001 Vitis vinifera HOM05D001896 ORTHO05D001862 7.0e-12 74.7 128 39.8
Migut.L00422 Erythranthe guttata HOM05D001896 ORTHO05D001862 9.1e-12 74.3 133 39.8
Haze_15187 Corylus avellana HOM05D001896 ORTHO05D001862 2.0e-11 73.2 140 37.9
Gohir.D05G214500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.0e-11 73.2 141 36.9
CiPaw.07G173200 Carya illinoinensis HOM05D001896 ORTHO05D001862 2.6e-11 72.8 136 39.7
Prupe.6G218500 Prunus persica HOM05D001896 ORTHO05D001862 2.6e-11 72.8 137 38.7
Gorai.009G221200 Gossypium raimondii HOM05D001896 ORTHO05D001862 4.5e-11 72.0 141 36.2
VMungo0251G2220 Vigna mungo HOM05D001896 ORTHO05D001862 4.5e-11 72.0 134 34.3
Nn5g30636 Nelumbo nucifera HOM05D001896 ORTHO05D001862 5.9e-11 71.6 129 40.3
Phvul.003G233900 Phaseolus vulgaris HOM05D001896 ORTHO05D001862 5.9e-11 71.6 138 36.2
Gohir.A05G211200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 7.7e-11 71.2 145 35.9
TWI74G0977 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 7.7e-11 71.2 153 34.6
Cc07_g07270 Coffea canephora HOM05D001896 ORTHO05D001862 1.0e-10 70.9 140 37.1
Duzib116G0259 Durio zibethinus HOM05D001896 ORTHO05D001862 1.0e-10 70.9 125 43.2
Cpa.g.c26343.5 Carica papaya HOM05D001896 ORTHO05D001862 1.3e-10 70.5 158 33.5
Lalb_Chr08g0245301 Lupinus albus HOM05D001896 ORTHO05D001862 1.7e-10 70.1 135 37.0
Oeu021445.1 Olea europaea HOM05D001896 ORTHO05D001862 1.7e-10 70.1 144 39.6
Solyc02g092180.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 1.7e-10 70.1 135 35.6
Lalb_Chr23g0267571 Lupinus albus HOM05D001896 ORTHO05D001862 2.2e-10 69.7 129 35.7
PGR004G2665 Punica granatum HOM05D001896 ORTHO05D001862 2.2e-10 69.7 161 34.2
Rhsim06G0063700 Rhododendron simsii HOM05D001896 ORTHO05D001862 2.2e-10 69.7 131 35.9
Medtr4g097260 Medicago truncatula HOM05D001896 ORTHO05D001862 2.9e-10 69.3 134 37.3
TPR.G24259 Trifolium pratense HOM05D001896 ORTHO05D001862 2.9e-10 69.3 158 32.3
Cfa013755 Carpinus fangiana HOM05D001896 ORTHO05D001862 3.8e-10 68.9 136 34.6
Oeu013335.1 Olea europaea HOM05D001896 ORTHO05D001862 3.8e-10 68.9 145 36.6
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 5.0e-10 68.6 138 38.4
Sopen02g036750 Solanum pennellii HOM05D001896 ORTHO05D001862 6.5e-10 68.2 136 34.6
Gohir.A01G123300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 8.5e-10 67.8 133 37.6
Glyma.05G107000 Glycine max HOM05D001896 ORTHO05D001862 1.1e-09 67.4 138 34.8
MD08G1080000 Malus domestica HOM05D001896 ORTHO05D001862 1.1e-09 67.4 146 34.9
Aqoxy6G02540 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 1.5e-09 67.0 128 38.3
ClCG01G017710 Citrullus lanatus HOM05D001896 ORTHO05D001862 1.5e-09 67.0 143 35.0
Ciclev10026650m.g Citrus clementina HOM05D001896 ORTHO05D001862 1.5e-09 67.0 136 35.3
FAN20G2517 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.5e-09 67.0 155 34.2
Thecc.08G086000 Theobroma cacao HOM05D001896 ORTHO05D001862 1.5e-09 67.0 137 35.0
FAN24G0761 Fragaria x ananassa HOM05D000371 ORTHO05D001484 1.9e-09 66.6 142 36.6
FAN27G2593 Fragaria x ananassa HOM05D000371 ORTHO05D001484 1.9e-09 66.6 142 36.6
Gohir.D01G110900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 1.9e-09 66.6 124 38.7
Gorai.002G135700 Gossypium raimondii HOM05D001896 ORTHO05D001862 1.9e-09 66.6 124 38.7
QL12p038359 Quercus lobata HOM05D001896 ORTHO05D001862 1.9e-09 66.6 135 40.0
Glyma.17G159800 Glycine max HOM05D001896 ORTHO05D001862 2.5e-09 66.2 135 37.0
CAN.G1075.51 Capsicum annuum HOM05D001896 ORTHO05D001862 3.2e-09 65.9 140 36.4
Dinv42246 Davidia involucrata HOM05D001896 ORTHO05D001862 3.2e-09 65.9 137 38.7
Eucgr.F00091 Eucalyptus grandis HOM05D001896 ORTHO05D001862 4.2e-09 65.5 148 35.1
FvH4_2g32830 Fragaria vesca HOM05D001896 ORTHO05D001862 4.2e-09 65.5 142 35.9
PGR083G2885 Punica granatum HOM05D001896 ORTHO05D001862 4.2e-09 65.5 133 36.1
CiPaw.08G051100 Carya illinoinensis HOM05D001896 ORTHO05D001862 5.5e-09 65.1 130 38.5
Aqoxy6G02538 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 9.4e-09 64.3 132 35.6
Potri.014G014500 Populus trichocarpa HOM05D001896 ORTHO05D001862 9.4e-09 64.3 141 36.9
Prupe.1G420800 Prunus persica HOM05D001896 ORTHO05D001862 9.4e-09 64.3 138 36.2
SalBow5G1212 Salvia bowleyana HOM05D001896 ORTHO05D001862 9.4e-09 64.3 129 40.3
HPP92_019629 Vanilla planifolia HOM05D001896 ORTHO05D001862 9.4e-09 64.3 151 34.4
PSO017G0117 Papaver somniferum HOM05D001896 ORTHO05D001862 1.6e-08 63.5 152 36.2
PGR142G1913 Punica granatum HOM05D001896 ORTHO05D001862 1.6e-08 63.5 147 34.7
Lsat_1_v5_gn_5_157821 Lactuca sativa HOM05D001896 ORTHO05D001862 2.1e-08 63.2 126 34.1
VMungo1309G2110 Vigna mungo HOM05D001896 ORTHO05D001862 2.1e-08 63.2 133 35.3
DCAR_003516 Daucus carota HOM05D001896 ORTHO05D001862 2.7e-08 62.8 133 33.8
Dinv16071 Davidia involucrata HOM05D001896 ORTHO05D001862 2.7e-08 62.8 137 38.0
Duzib041G0206 Durio zibethinus HOM05D001896 ORTHO05D001862 2.7e-08 62.8 125 37.6
Duzib052G0412 Durio zibethinus HOM05D001896 ORTHO05D001862 2.7e-08 62.8 136 35.3
Glyma.04G046800 Glycine max HOM05D001896 ORTHO05D001862 2.7e-08 62.8 140 36.4
Potri.014G014600 Populus trichocarpa HOM05D001896 ORTHO05D001862 2.7e-08 62.8 153 38.6
EL10Ac1g02360 Beta vulgaris HOM05D001896 ORTHO05D001862 3.6e-08 62.4 134 38.1
Duzib093G0976 Durio zibethinus HOM05D001896 ORTHO05D001862 3.6e-08 62.4 131 38.9
RcHm_v2.0_Chr6g0309871 Rosa chinensis HOM05D001896 ORTHO05D001862 3.6e-08 62.4 141 37.6
PSO170G5938 Papaver somniferum HOM05D001896 ORTHO05D001862 4.7e-08 62.0 152 36.2
SEGI_27703 Sequoiadendron giganteum HOM05D001896 ORTHO05D001862 8.0e-08 61.2 118 37.3
ClCG08G016610 Citrullus lanatus HOM05D001896 ORTHO05D001862 1.8e-07 60.1 146 34.2
Lj4g0024702 Lotus japonicus HOM05D001896 ORTHO05D001862 1.8e-07 60.1 119 32.8
CANSAT25G3829 Cannabis sativa HOM05D001896 ORTHO05D001862 2.3e-07 59.7 147 35.4
Potri.014G006300 Populus trichocarpa HOM05D001896 ORTHO05D001862 2.3e-07 59.7 152 28.9
Os03g0730200 Oryza sativa ssp. japonica HOM05D001896 ORTHO05D001862 3.0e-07 59.3 143 30.1
MELO3C010793.2 Cucumis melo HOM05D001896 ORTHO05D001862 5.2e-07 58.5 146 35.6
Glyma.06G047600 Glycine max HOM05D001896 ORTHO05D001862 5.2e-07 58.5 144 35.4
AUR62037407 Chenopodium quinoa HOM05D001896 ORTHO05D001862 6.7e-07 58.2 140 35.0
Manes.10G086000 Manihot esculenta HOM05D001896 ORTHO05D001862 6.7e-07 58.2 152 32.9
Gohir.D05G265500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 8.8e-07 57.8 155 34.2
Gorai.009G277300 Gossypium raimondii HOM05D001896 ORTHO05D001862 8.8e-07 57.8 155 34.8
Lj1g0008502 Lotus japonicus HOM05D001896 ORTHO05D001862 8.8e-07 57.8 137 35.8
Lalb_Chr22g0355731 Lupinus albus HOM05D001896 ORTHO05D001862 8.8e-07 57.8 137 32.8
ATR0739G076 Amborella trichopoda HOM05D001896 ORTHO05D001862 1.2e-06 57.4 137 36.5
SalBow2G3314 Salvia bowleyana HOM05D001896 ORTHO05D001862 1.2e-06 57.4 143 34.3
SEGI_21994 Sequoiadendron giganteum HOM05D001896 ORTHO05D001862 1.2e-06 57.4 87 44.8
Atru.chr13.855 Acer truncatum HOM05D001896 ORTHO05D001862 1.5e-06 57.0 139 33.8
CsaV3_2G026000 Cucumis sativus L. HOM05D001896 ORTHO05D001862 1.5e-06 57.0 133 33.8
Glyma.17G233700 Glycine max HOM05D001896 ORTHO05D001862 1.5e-06 57.0 145 35.9
Potri.007G006100 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.5e-06 57.0 143 30.1
Sabra14G0008700 Salix brachista HOM05D001896 ORTHO05D001862 1.5e-06 57.0 141 36.2
CANSAT01G1870 Cannabis sativa HOM05D001896 ORTHO05D001862 2.0e-06 56.6 142 34.5
Migut.N02794 Erythranthe guttata HOM05D001896 ORTHO05D001862 2.0e-06 56.6 127 36.2
Manes.13G110000 Manihot esculenta HOM05D001896 ORTHO05D001862 2.0e-06 56.6 141 31.2
Oeu053629.1 Olea europaea HOM05D001896 ORTHO05D001862 2.0e-06 56.6 138 33.3
Potri.002G117100 Populus trichocarpa HOM05D001896 ORTHO05D001862 2.0e-06 56.6 141 36.9
SalBow7G1468 Salvia bowleyana HOM05D001896 ORTHO05D001862 2.0e-06 56.6 142 33.8
CSS0026617 Camellia sinensis var. sinensis HOM05D001896 ORTHO05D001862 2.6e-06 56.2 136 31.6
Hma1.2p1_1170F.1_g263360 Hydrangea macrophylla HOM05D001896 ORTHO05D001862 2.6e-06 56.2 142 31.7
SGA_v2.0_scaffold13G06404 Striga asiatica HOM05D001896 ORTHO05D001862 2.6e-06 56.2 138 33.3
COL.COLO4_32491 Corchorus olitorius HOM05D001896 ORTHO05D001862 3.3e-06 55.8 107 35.5
DCAR_010809 Daucus carota HOM05D001896 ORTHO05D001862 3.3e-06 55.8 128 35.2
Eucgr.I01030 Eucalyptus grandis HOM05D001896 ORTHO05D001862 3.3e-06 55.8 122 36.9
Psat4g081880 Pisum sativum HOM05D001896 ORTHO05D001862 3.3e-06 55.8 148 34.5
PGR102G1077 Punica granatum HOM05D001896 ORTHO05D001862 3.3e-06 55.8 141 36.9
SalBow2G0839 Salvia bowleyana HOM05D001896 ORTHO05D001862 3.3e-06 55.8 143 33.6
Cpa.g.sc142.51 Carica papaya HOM05D001896 ORTHO05D001862 4.4e-06 55.5 140 35.7
Glyma.14G089054 Glycine max HOM05D001896 ORTHO05D001862 4.4e-06 55.5 131 32.8
Gohir.A05G263200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.4e-06 55.5 155 34.2
Nn1g09572 Nelumbo nucifera HOM05D001896 ORTHO05D001862 4.4e-06 55.5 84 41.7
TPR.G33724 Trifolium pratense HOM05D001896 ORTHO05D001862 4.4e-06 55.5 144 33.3
Cpa.g.sc106.35 Carica papaya HOM05D001896 ORTHO05D001862 5.7e-06 55.1 139 33.1
Lsat_1_v5_gn_4_161761 Lactuca sativa HOM05D001896 ORTHO05D001862 5.7e-06 55.1 139 32.4
AUR62034996 Chenopodium quinoa HOM05D001896 ORTHO05D001862 7.5e-06 54.7 132 36.4
Phvul.009G073000 Phaseolus vulgaris HOM05D001896 ORTHO05D001862 7.5e-06 54.7 136 33.1
Sed0003560 Sechium edule HOM05D001896 ORTHO05D001862 7.5e-06 54.7 134 34.3
Eucgr.I00688 Eucalyptus grandis HOM05D001896 ORTHO05D001862 9.7e-06 54.3 109 38.5
Prupe.8G148800 Prunus persica HOM05D001896 ORTHO05D001862 9.7e-06 54.3 135 31.1


User provided reference genes

Program Settings