Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 5.6e-81 305.1 274 100.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-62 243.8 279 58.4
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.2e-56 224.2 274 77.4
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.6e-54 214.9 272 77.2
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.6e-54 214.9 272 77.2
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 77.9
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.9e-52 210.3 266 76.3
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 7.1e-52 208.4 269 77.3
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 9.3e-52 208.0 267 76.8
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.2e-51 207.6 269 75.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.2e-51 207.6 269 75.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.1e-51 206.8 269 75.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.7e-51 206.5 267 76.8
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 75.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 75.5
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.6e-51 205.7 274 75.5
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 4.6e-51 205.7 267 75.7
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.8e-51 204.9 274 74.8
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.0e-50 204.5 267 75.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.3e-50 204.1 274 73.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.7e-50 203.8 267 75.3
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-50 203.4 266 75.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.3e-50 203.4 274 75.2
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.0e-50 203.0 268 76.5
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 3.0e-50 203.0 269 75.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 3.0e-50 203.0 248 79.4
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 6.6e-50 201.8 274 74.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 6.6e-50 201.8 274 74.1
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.1e-49 201.1 264 75.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-49 201.1 267 76.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.1e-49 201.1 267 76.0
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.5e-49 200.7 271 76.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 3.3e-49 199.5 267 73.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.6e-49 198.7 267 74.9
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.6e-49 198.7 267 74.9
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.6e-49 198.7 266 75.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 7.3e-49 198.4 270 74.1
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 7.3e-49 198.4 274 73.7
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 7.3e-49 198.4 274 73.7
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 9.6e-49 198.0 271 75.3
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.3e-48 197.6 267 75.7
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.6e-48 197.2 267 65.5
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.1e-48 196.8 267 74.2
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.8e-48 196.4 267 73.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.8e-48 196.4 267 73.4
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 3.6e-48 196.1 273 73.6
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 4.8e-48 195.7 268 71.3
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 4.8e-48 195.7 267 72.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 8.1e-48 194.9 266 73.7
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.4e-47 194.1 267 74.5
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.8e-47 193.7 274 74.5
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.8e-47 193.7 267 74.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.8e-47 193.7 268 75.4
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.8e-47 193.7 266 75.6
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.4e-47 193.4 267 72.3
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.4e-47 193.4 264 73.5
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.1e-47 193.0 276 69.2
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.1e-47 193.0 256 76.2
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 4.0e-47 192.6 268 74.6
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 9.0e-47 191.4 275 73.8
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 2.0e-46 190.3 268 73.5
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.0e-46 190.3 252 74.2
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-46 189.9 267 71.9
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.6e-46 188.3 267 71.5
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 7.6e-46 188.3 268 72.0
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 9.9e-46 188.0 249 77.5
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 9.9e-46 188.0 250 77.6
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 9.9e-46 188.0 267 73.4
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.3e-45 187.6 273 72.2
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.4e-45 185.3 262 73.3
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 8.4e-45 184.9 269 71.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.1e-44 184.5 270 67.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.4e-44 184.1 267 70.4
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.9e-44 183.7 269 71.4
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.4e-44 183.3 268 70.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.4e-44 183.3 266 74.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.2e-44 183.0 269 69.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.4e-44 182.2 269 71.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 7.1e-44 181.8 269 71.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.1e-44 181.8 272 68.8
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.2e-43 181.0 269 69.9
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.1e-43 180.3 266 70.3
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.1e-43 180.3 269 71.4
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-43 180.3 269 71.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-43 180.3 267 71.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.1e-43 180.3 269 71.4
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.1e-43 180.3 269 71.4
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 2.7e-43 179.9 248 78.6
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 2.7e-43 179.9 264 68.6
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.7e-43 179.9 243 77.4
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 3.5e-43 179.5 272 71.3
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 3.5e-43 179.5 267 71.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 3.5e-43 179.5 267 71.5
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 4.6e-43 179.1 266 71.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 6.0e-43 178.7 270 70.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 6.0e-43 178.7 270 70.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 6.0e-43 178.7 270 70.0
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.9e-43 178.3 269 70.3
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 7.9e-43 178.3 267 69.7
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.3e-42 177.6 268 70.9
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.8e-42 177.2 270 70.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.8e-42 177.2 274 69.0
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.0e-42 176.4 271 73.4
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-42 176.4 270 69.6
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-42 176.4 269 71.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 3.0e-42 176.4 266 70.7
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.9e-42 176.0 253 72.7
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 8.7e-42 174.9 267 70.0
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.1e-41 174.5 213 87.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.9e-41 173.7 269 68.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.5e-41 173.3 267 73.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 2.5e-41 173.3 268 70.1
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 4.3e-41 172.6 249 72.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 7.4e-41 171.8 264 65.5
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.1e-40 170.2 265 69.4
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.1e-40 170.2 264 70.5
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.1e-40 170.2 265 69.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.8e-40 169.9 264 68.2
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.8e-40 169.9 264 68.2
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.8e-40 169.1 257 71.6
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 6.2e-40 168.7 270 69.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.8e-39 167.2 276 67.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.4e-39 166.8 258 71.3
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.4e-39 166.8 268 72.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 9.0e-39 164.9 209 86.1
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.0e-38 163.7 242 78.1
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.7e-37 160.6 268 67.5
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.2e-37 160.2 229 77.7
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.2e-37 160.2 277 67.5
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 3.8e-37 159.5 227 78.9
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.9e-36 157.1 256 64.1
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.2e-36 156.0 268 69.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 7.1e-36 155.2 96 79.2
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.6e-35 154.1 251 70.9
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.0e-34 151.4 211 82.5
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.0e-34 151.4 267 59.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 8.7e-34 148.3 255 67.1
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.7e-34 148.3 277 34.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.9e-33 147.1 208 81.7
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.3e-33 146.4 259 67.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.1e-32 143.7 263 66.2
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.4e-31 141.0 206 80.6
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 5.3e-31 139.0 267 52.8
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.3e-29 134.4 92 67.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 7.1e-28 128.6 237 70.0
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.0e-26 123.2 208 76.9
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.5e-21 105.1 80 66.2
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.1e-20 104.8 86 67.4
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 3.2e-20 103.2 266 51.9
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 2.1e-19 100.5 83 59.0
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.6e-19 99.8 271 60.1
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.3e-18 97.1 85 56.5
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.1e-17 94.7 271 60.1
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.0e-13 81.6 249 53.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 3.6e-11 73.2 83 44.6
EL10Ac5g10582 Beta vulgaris HOM05D000094 ORTHO05D001056 4.5e-06 56.2 99 40.4


User provided reference genes

Program Settings