Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.4e-220 769.2 381 100.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.8e-192 675.2 390 85.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.9e-181 638.3 390 81.0
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 2.3e-178 629.0 502 67.1
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 8.1e-171 604.0 388 76.0
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 9.5e-164 580.5 402 71.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 6.2e-163 577.8 392 72.7
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.4e-162 575.9 386 73.6
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.0e-161 572.8 390 73.1
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.4e-161 571.6 390 72.1
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 9.9e-161 570.5 390 71.3
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.7e-160 569.7 379 71.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.4e-159 565.8 405 68.6
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 6.0e-158 561.2 390 71.3
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 4.3e-156 555.1 381 71.4
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 2.1e-155 552.7 381 71.4
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 2.8e-155 552.4 391 70.3
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 4.7e-155 551.6 390 70.8
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 4.7e-155 551.6 390 69.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 6.2e-155 551.2 421 68.9
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 8.1e-155 550.8 390 69.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.8e-154 549.7 390 69.7
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 6.9e-154 547.7 390 69.2
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.5e-153 546.6 386 68.7
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 2.6e-153 545.8 390 70.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.4e-153 545.4 390 70.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 4.4e-153 545.0 390 67.2
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 5.8e-153 544.7 390 70.5
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.3e-152 543.5 390 66.9
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.7e-152 543.1 390 69.7
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.9e-152 541.6 390 67.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 4.9e-152 541.6 390 68.2
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.9e-151 539.7 388 69.3
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.7e-150 535.8 391 67.8
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 3.5e-150 535.4 447 61.5
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 4.6e-150 535.0 390 66.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 2.3e-149 532.7 416 64.9
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.3e-149 532.7 390 67.7
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.3e-149 532.7 390 67.9
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.3e-149 532.7 390 67.7
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 3.0e-149 532.3 416 65.1
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 3.0e-149 532.3 390 67.9
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.9e-149 531.9 390 67.9
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 3.9e-149 531.9 390 68.2
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.5e-148 530.0 379 66.5
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.5e-148 530.0 390 67.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.9e-148 529.6 393 67.7
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.5e-148 529.3 390 67.7
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 5.6e-148 528.1 393 67.2
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.3e-148 527.7 390 67.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.1e-147 526.2 389 67.9
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.8e-147 525.8 380 67.9
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 2.8e-147 525.8 393 67.7
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.8e-147 525.0 381 68.2
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 4.8e-147 525.0 370 70.3
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 6.2e-147 524.6 391 67.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.4e-146 523.5 390 67.4
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.4e-146 523.5 390 67.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.8e-146 523.1 390 67.2
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.4e-146 522.7 388 65.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 4.0e-146 521.9 390 66.2
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.0e-145 519.6 393 66.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.0e-145 519.6 392 67.3
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.5e-145 518.5 390 66.4
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 5.8e-145 518.1 466 59.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 9.9e-145 517.3 391 65.7
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 6.4e-144 514.6 393 66.7
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 8.4e-144 514.2 390 66.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.2e-143 512.3 391 65.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 5.4e-143 511.5 390 63.8
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 9.3e-143 510.8 384 64.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.2e-142 510.4 391 64.5
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-142 510.0 390 65.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.5e-142 508.8 391 64.7
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.3e-141 506.9 391 65.0
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 3.9e-141 505.4 391 64.7
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.3e-140 501.9 356 70.2
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.1e-138 497.3 358 69.3
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.3e-136 490.3 370 67.0
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.9e-136 489.2 425 60.5
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.9e-135 486.5 442 57.9
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.1e-134 483.0 425 59.5
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 4.6e-134 481.9 330 71.2
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 3.8e-128 462.2 392 58.2
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 8.4e-128 461.1 379 60.9
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 5.5e-127 458.4 358 64.0
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 6.7e-117 424.9 272 75.4
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.1e-116 424.1 393 57.0
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.5e-116 422.9 350 61.1
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.3e-112 410.6 312 64.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.8e-112 409.1 349 59.0
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.6e-110 402.5 272 71.3
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.0e-101 374.4 393 51.7
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.6e-94 350.5 294 62.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.4e-92 342.8 406 43.8
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 1.7e-91 340.5 401 45.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 8.8e-85 318.2 291 54.6
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.4e-84 316.2 249 64.7
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 4.4e-84 315.8 397 44.1
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.3e-83 314.3 220 71.4
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 3.3e-79 299.7 231 65.8
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 6.3e-75 285.4 230 62.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 8.6e-72 275.0 193 69.9
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.9e-71 273.9 482 35.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 7.5e-68 261.9 372 38.7
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 1.3e-59 234.6 319 41.1
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.9e-47 194.1 143 66.4
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 3.5e-41 173.3 130 67.7
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 4.6e-41 172.9 531 26.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.2e-35 154.1 107 66.4
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-30 137.5 100 61.0
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-30 137.1 89 71.9
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-29 134.8 89 70.8
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-29 134.8 89 70.8
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-29 134.8 89 70.8
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-29 134.8 80 80.0
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-29 134.4 89 70.8
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.0e-29 133.3 89 69.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.3e-29 132.9 89 69.7
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.0e-29 132.1 82 74.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 9.9e-28 128.6 171 42.1
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-27 127.9 89 66.3
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 3.2e-26 123.6 79 73.4
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-25 121.3 80 70.0
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-25 119.8 69 78.3
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 2.3e-24 117.5 107 55.1
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.9e-23 114.4 190 36.3
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.2e-20 105.1 69 71.0
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-19 102.1 61 77.0
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.0e-19 102.1 61 77.0
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-19 102.1 260 34.2
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.9e-19 100.5 61 75.4
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.8e-19 100.1 60 78.3
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-18 96.7 71 62.0
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.7e-17 94.0 61 73.8
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 3.5e-17 93.6 154 41.6
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.3e-16 90.9 61 68.9
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-14 85.1 70 61.4
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.1e-13 80.5 89 48.3
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 9.0e-13 79.0 101 47.5
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 7.2e-10 69.3 64 48.4
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 5.7e-07 59.7 32 81.2
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 2.2e-06 57.8 41 63.4
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.7e-06 57.0 34 79.4
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 6.3e-06 56.2 58 46.6


User provided reference genes

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