Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.3e-206 721.5 365 100.0
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.4e-119 433.7 270 84.4
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.3e-117 427.2 266 82.7
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.3e-117 427.2 266 82.7
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 9.3e-116 421.0 270 81.1
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.3e-114 417.2 304 74.7
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 3.9e-114 415.6 263 82.9
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 6.6e-114 414.8 269 79.2
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 8.7e-114 414.5 266 81.2
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 8.7e-114 414.5 270 78.9
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.5e-113 413.7 271 78.6
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.9e-113 413.3 277 77.6
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 2.5e-113 412.9 267 80.9
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 3.3e-113 412.5 269 80.3
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.6e-112 410.2 278 76.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 2.1e-112 409.8 269 78.1
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.8e-112 409.5 278 76.6
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 3.6e-112 409.1 269 79.9
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 4.8e-112 408.7 271 76.8
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 4.8e-112 408.7 270 80.0
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.1e-111 407.5 272 78.7
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.8e-111 406.8 270 78.9
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.3e-111 405.2 283 74.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 5.3e-111 405.2 269 75.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 6.9e-111 404.8 269 77.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 9.0e-111 404.4 268 79.9
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 9.0e-111 404.4 269 77.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.2e-110 404.1 269 76.6
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.0e-110 403.3 322 66.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.0e-110 403.3 267 81.3
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 2.0e-110 403.3 277 75.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.0e-110 403.3 270 79.3
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.5e-110 402.1 269 78.4
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 5.8e-110 401.7 269 78.1
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 1.3e-109 400.6 268 78.4
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.7e-109 400.2 267 78.7
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.2e-109 399.8 281 76.2
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.2e-109 399.8 268 77.2
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 3.8e-109 399.1 271 78.6
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 4.9e-109 398.7 268 78.0
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-109 398.7 268 77.6
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.1e-108 397.5 269 78.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.4e-108 397.1 269 79.2
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.4e-108 395.2 266 78.6
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 7.1e-108 394.8 273 75.8
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 9.3e-108 394.4 267 78.7
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 3.5e-107 392.5 267 78.3
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 6.0e-107 391.7 266 77.1
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 3.0e-106 389.4 268 75.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 5.1e-106 388.7 269 77.0
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 8.7e-106 387.9 281 75.1
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 8.7e-106 387.9 268 74.3
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 3.3e-105 386.0 270 77.0
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 5.6e-105 385.2 235 86.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.6e-104 383.6 266 75.6
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.6e-104 383.6 268 73.5
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.6e-104 383.6 269 74.7
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.8e-104 382.1 270 74.8
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 6.2e-104 381.7 251 76.1
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.1e-103 380.9 271 72.7
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.1e-103 380.9 271 72.7
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.8e-103 380.2 269 75.1
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.4e-103 379.8 269 77.0
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.3e-103 378.6 272 75.4
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 6.9e-103 378.3 254 75.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 6.9e-103 378.3 268 72.4
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 9.0e-103 377.9 267 75.7
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.2e-102 377.5 278 71.6
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 2.6e-102 376.3 282 69.9
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.6e-102 376.3 269 73.2
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 3.4e-102 375.9 269 75.1
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.4e-102 375.9 269 75.1
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 4.5e-102 375.6 282 72.7
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 4.5e-102 375.6 271 72.0
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.6e-102 374.8 273 73.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.6e-102 374.8 273 73.6
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 7.6e-102 374.8 273 73.6
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.6e-102 374.8 266 73.7
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.7e-101 373.6 267 74.9
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.7e-101 373.6 273 74.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.2e-101 373.2 269 72.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 8.4e-101 371.3 275 70.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.2e-99 367.5 279 70.3
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 2.1e-99 366.7 280 69.6
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.5e-99 365.9 269 73.6
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.0e-98 364.4 281 68.7
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.0e-98 364.4 280 70.7
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.3e-98 364.0 281 68.7
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 1.1e-95 354.4 270 71.9
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.8e-95 353.6 272 71.3
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 4.1e-95 352.4 272 69.1
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 9.0e-95 351.3 268 69.8
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 5.8e-94 348.6 268 69.4
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.2e-93 346.7 268 68.3
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.2e-91 340.9 235 74.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.3e-90 337.4 259 69.1
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.2e-88 330.1 274 65.0
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 4.1e-87 325.9 267 65.2
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 4.1e-87 325.9 242 69.0
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.6e-86 323.2 222 75.2
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.8e-80 302.4 233 70.4
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 5.3e-79 298.9 261 59.8
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 6.9e-79 298.5 272 61.4
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.7e-77 293.9 272 62.1
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 5.1e-74 282.3 259 58.3
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.2e-72 276.9 239 61.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 4.8e-72 275.8 170 80.6
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.2e-69 266.9 184 77.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 3.3e-65 253.1 155 81.9
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 3.7e-64 249.6 232 57.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.3e-58 230.3 262 50.0
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 2.6e-57 226.9 182 65.9
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 3.5e-54 216.5 234 52.6
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 4.5e-46 189.5 219 54.8
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.8e-42 177.6 134 67.9
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.4e-40 169.1 266 44.7
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.6e-27 126.7 121 59.5
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.7e-24 116.7 81 70.4
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.1e-20 105.1 87 64.4
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.5e-20 104.8 87 65.5
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-19 101.7 87 64.4
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 3.4e-09 67.0 66 56.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-08 65.1 66 56.1


User provided reference genes

Program Settings