Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 3.4e-165 585.1 334 100.0
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.7e-135 485.3 295 86.4
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.9e-125 451.4 295 80.7
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 5.9e-117 424.9 291 77.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 4.7e-114 415.2 287 77.4
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.2e-101 374.0 330 64.5
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.2e-101 374.0 330 64.5
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 7.7e-101 371.3 331 62.8
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.3e-100 370.5 299 68.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.5e-99 366.3 299 67.6
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.2e-98 364.0 292 69.9
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.3e-97 359.8 302 67.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 3.4e-96 355.9 299 64.9
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.7e-95 353.6 243 75.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-94 350.5 301 66.8
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.4e-94 348.6 313 61.3
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 9.1e-94 347.8 307 64.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.7e-93 346.3 321 62.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.3e-92 344.0 294 65.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.3e-92 344.0 302 63.2
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.7e-92 343.6 298 64.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.9e-91 340.1 284 63.4
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 4.0e-89 332.4 342 64.6
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 9.8e-88 327.8 314 62.1
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.3e-87 327.4 305 62.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.3e-87 327.4 298 62.1
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-87 326.6 309 62.1
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.0e-86 321.6 298 63.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.9e-85 318.5 297 60.6
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.0e-84 315.5 297 60.3
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.9e-83 313.5 297 60.3
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.5e-83 313.2 295 62.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.3e-83 312.8 305 60.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.3e-83 312.4 305 59.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.6e-83 312.0 297 59.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 7.3e-83 311.6 299 62.5
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 5.2e-81 305.4 308 58.4
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 5.4e-78 295.4 307 59.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.4e-78 295.4 297 60.6
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 3.5e-77 292.7 306 56.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.5e-77 292.7 302 57.9
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.6e-77 292.4 297 59.9
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 7.8e-77 291.6 302 58.3
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.3e-76 290.0 311 56.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.3e-76 290.0 297 59.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.0e-76 289.7 297 59.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.0e-76 289.7 297 59.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.9e-76 289.3 296 58.4
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.0e-76 288.9 297 59.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.6e-76 288.5 299 57.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 8.6e-76 288.1 311 54.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 5.6e-75 285.4 292 57.9
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 5.6e-75 285.4 274 59.1
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 3.6e-74 282.7 288 56.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 6.2e-74 282.0 311 55.6
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 6.2e-74 282.0 318 54.1
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.0e-73 281.2 296 58.1
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 3.1e-73 279.6 266 62.0
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.2e-73 278.9 293 57.0
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 5.2e-73 278.9 307 54.1
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 6.8e-73 278.5 318 55.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 8.9e-73 278.1 314 53.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.5e-72 277.3 309 56.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.5e-72 277.3 302 57.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.6e-72 276.6 307 56.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.6e-72 276.6 297 57.6
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 4.4e-72 275.8 296 57.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.4e-72 275.8 301 55.5
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 4.4e-72 275.8 296 57.4
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.2e-71 273.5 291 55.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.2e-71 273.5 281 58.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.7e-71 272.7 298 57.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.4e-71 271.9 292 56.5
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 8.3e-71 271.6 299 57.9
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.1e-70 271.2 296 57.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.4e-70 270.0 312 54.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.2e-70 269.6 300 54.7
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.1e-70 269.2 289 56.7
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 4.1e-70 269.2 298 55.4
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 5.4e-70 268.9 300 53.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 6.0e-69 265.4 341 57.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.9e-67 260.4 306 54.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.3e-67 259.2 310 52.9
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 5.6e-67 258.8 297 53.2
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 9.5e-67 258.1 299 53.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-66 257.7 315 52.1
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 2.1e-66 256.9 340 47.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.1e-66 256.9 215 65.1
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-66 256.5 302 53.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-66 256.5 302 53.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.8e-66 256.5 298 53.7
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 5.2e-65 252.3 296 51.7
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.9e-65 251.5 259 56.8
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-64 251.1 275 55.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.5e-64 250.8 294 53.1
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.6e-64 250.0 296 51.4
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.5e-64 248.4 294 53.1
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-63 247.7 314 49.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.2e-63 246.9 302 53.0
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 3.7e-63 246.1 302 53.0
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 4.9e-63 245.7 304 52.3
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.9e-63 245.7 303 52.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.4e-63 245.4 303 52.8
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 8.3e-63 245.0 300 53.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.3e-63 245.0 302 51.3
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-62 244.6 235 59.6
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.4e-62 244.2 297 51.5
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.4e-62 242.3 293 52.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 9.2e-62 241.5 296 52.4
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.2e-62 241.5 290 52.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.6e-61 240.7 167 76.6
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.1e-61 240.4 303 52.1
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.7e-61 240.0 302 52.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.0e-61 238.8 301 52.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 6.0e-61 238.8 302 51.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 235 58.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.3e-60 237.7 297 51.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-60 237.3 302 52.0
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.3e-60 236.9 311 50.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.3e-60 236.9 298 51.3
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-58 231.1 308 50.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.2e-58 231.1 298 50.3
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.8e-58 229.9 162 74.1
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.3e-57 226.9 292 52.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.6e-56 223.4 160 70.6
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.3e-55 221.1 305 49.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.4e-54 217.6 159 71.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.1e-54 215.3 299 48.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.8e-53 211.8 289 49.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.1e-52 209.1 301 49.2
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.3e-51 206.1 166 64.5
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.3e-51 206.1 307 46.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.3e-51 206.1 302 45.7
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.6e-50 204.1 296 47.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.4e-49 200.3 123 78.9
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.6e-48 195.3 250 51.6
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-47 194.5 295 44.7
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.5e-45 186.4 297 44.4
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 8.7e-44 181.8 295 45.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 4.8e-42 176.0 182 57.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.1e-41 174.9 289 42.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-38 164.9 136 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.2e-38 162.9 131 61.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.2e-37 161.4 276 42.4
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.7e-37 160.2 243 45.3
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.8e-36 157.5 120 64.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.0e-32 144.1 152 54.6
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.5e-32 142.9 130 59.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.8e-32 142.5 284 36.6
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.4e-31 138.7 231 42.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 5.5e-30 136.0 283 36.7
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.1e-25 121.7 166 50.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 7.6e-24 115.5 77 75.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 8.4e-23 112.1 161 39.1
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 9.3e-22 108.6 184 40.2
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-19 101.7 172 45.3
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 6.3e-18 95.9 109 52.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.2e-18 95.5 139 46.8
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.2e-16 91.7 107 57.9
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-09 68.6 57 56.1
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 2.4e-09 67.4 92 51.1
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.4e-09 67.4 106 46.2
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.9e-07 60.5 47 61.7


User provided reference genes

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