Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0078000 Rhododendron simsii HOM05D007637 ORTHO05D009508 1.8e-66 255.8 128 100.0
Rhsim10G0078100 Rhododendron simsii HOM05D007637 ORTHO05D009508 1.0e-37 160.2 123 76.4
Actinidia36353 Actinidia chinensis HOM05D007637 ORTHO05D009508 4.1e-26 121.7 126 57.9
CSS0034381 Camellia sinensis var. sinensis HOM05D007637 ORTHO05D009508 2.5e-23 112.5 128 57.0
Thecc.04G125100 Theobroma cacao HOM05D007637 ORTHO05D009508 1.6e-22 109.8 128 53.9
Dinv14862 Davidia involucrata HOM05D007637 ORTHO05D009508 1.4e-21 106.7 128 53.1
Gohir.D07G079900 Gossypium hirsutum HOM05D007637 ORTHO05D009508 6.7e-21 104.4 128 50.0
Gorai.001G084700 Gossypium raimondii HOM05D007637 ORTHO05D009508 6.7e-21 104.4 128 50.0
Gohir.A07G075400 Gossypium hirsutum HOM05D007637 ORTHO05D009508 8.8e-21 104.0 128 50.0
DCAR_010721 Daucus carota HOM05D007637 ORTHO05D009508 2.0e-20 102.8 131 51.1
Hma1.2p1_0283F.1_g113660 Hydrangea macrophylla HOM05D007637 ORTHO05D009508 4.4e-20 101.7 127 52.0
GSVIVG01030920001 Vitis vinifera HOM05D007637 ORTHO05D009508 7.4e-20 100.9 128 49.2
TAR374G0670 Trochodendron aralioides HOM05D007637 ORTHO05D009508 4.8e-19 98.2 128 49.2
GSVIVG01030917001 Vitis vinifera HOM05D007637 ORTHO05D009508 4.8e-19 98.2 128 50.8
GSVIVG01030918001 Vitis vinifera HOM05D007637 ORTHO05D009508 4.8e-19 98.2 128 50.8
Manes.02G073000 Manihot esculenta HOM05D007637 ORTHO05D009508 1.4e-18 96.7 128 46.1
Gohir.D07G182150 Gossypium hirsutum HOM05D007637 ORTHO05D009508 3.1e-18 95.5 129 48.1
Gorai.001G203000 Gossypium raimondii HOM05D007637 ORTHO05D009508 3.1e-18 95.5 129 48.1
Duzib133G0287 Durio zibethinus HOM05D007637 ORTHO05D009508 4.1e-18 95.1 128 48.4
TAR629G1467 Trochodendron aralioides HOM05D007637 ORTHO05D009508 5.3e-18 94.7 128 50.0
Dinv33980 Davidia involucrata HOM05D007637 ORTHO05D009508 1.2e-17 93.6 113 56.6
Oeu007437.1 Olea europaea HOM05D007637 ORTHO05D009508 1.6e-17 93.2 98 53.1
Potri.017G122100 Populus trichocarpa HOM05D007637 ORTHO05D009508 2.6e-17 92.4 129 48.8
CiPaw.04G044900 Carya illinoinensis HOM05D007637 ORTHO05D009508 5.9e-17 91.3 128 43.8
Gohir.A07G175550 Gossypium hirsutum HOM05D007637 ORTHO05D009508 5.9e-17 91.3 129 46.5
Ciclev10013623m.g Citrus clementina HOM05D007637 ORTHO05D009508 1.0e-16 90.5 132 46.2
PGR042G0465 Punica granatum HOM05D007637 ORTHO05D009508 1.0e-16 90.5 127 46.5
Oeu047428.1 Olea europaea HOM05D007637 ORTHO05D009508 1.3e-16 90.1 125 47.2
Atru.chr1.1552 Acer truncatum HOM05D007637 ORTHO05D009508 1.7e-16 89.7 123 47.2
Actinidia15914 Actinidia chinensis HOM05D007637 ORTHO05D009508 2.2e-16 89.4 108 53.7
Phvul.008G009500 Phaseolus vulgaris HOM05D007637 ORTHO05D009508 2.2e-16 89.4 125 47.2
Lj1g0007116 Lotus japonicus HOM05D007637 ORTHO05D009508 3.8e-16 88.6 132 45.5
Sabra04G0062800 Salix brachista HOM05D007637 ORTHO05D009508 8.5e-16 87.4 137 45.3
Gohir.D07G182500 Gossypium hirsutum HOM05D007637 ORTHO05D009508 1.1e-15 87.0 128 45.3
MBI10_g37696_MAGBIO Magnolia biondii HOM05D007637 ORTHO05D009508 1.5e-15 86.7 128 46.1
Glyma.02G090700 Glycine max HOM05D007637 ORTHO05D009508 1.9e-15 86.3 127 44.9
Gorai.001G203100 Gossypium raimondii HOM05D007637 ORTHO05D009508 1.9e-15 86.3 126 44.4
VMungo1383G3686 Vigna mungo HOM05D007637 ORTHO05D009508 1.9e-15 86.3 123 44.7
Dinv16187 Davidia involucrata HOM05D007637 ORTHO05D009508 3.2e-15 85.5 126 43.7
Cfa007872 Carpinus fangiana HOM05D007637 ORTHO05D009508 4.2e-15 85.1 128 43.0
Manes.06G062300 Manihot esculenta HOM05D007637 ORTHO05D009508 4.2e-15 85.1 96 46.9
Glyma.18G292400 Glycine max HOM05D007637 ORTHO05D009508 5.5e-15 84.7 129 45.7
Medtr7g082920 Medicago truncatula HOM05D007637 ORTHO05D009508 5.5e-15 84.7 131 42.0
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 5.5e-15 84.7 100 47.0
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 5.5e-15 84.7 100 47.0
Sed0013286 Sechium edule HOM05D007637 ORTHO05D009508 7.2e-15 84.3 104 46.2
Manes.14G136000 Manihot esculenta HOM05D007637 ORTHO05D009508 2.1e-14 82.8 124 41.9
Manes.01G114400 Manihot esculenta HOM05D007637 ORTHO05D009508 2.7e-14 82.4 124 45.2
Prupe.3G151000 Prunus persica HOM05D007637 ORTHO05D009508 4.7e-14 81.6 130 43.8
TAR622G1280 Trochodendron aralioides HOM05D007637 ORTHO05D009508 6.1e-14 81.3 101 47.5
Cpa.g.sc116.6 Carica papaya HOM05D007637 ORTHO05D009508 1.4e-13 80.1 98 51.0
MD09G1259400 Malus domestica HOM05D007637 ORTHO05D009508 1.4e-13 80.1 129 44.2
Manes.02G073100 Manihot esculenta HOM05D007637 ORTHO05D009508 2.3e-13 79.3 125 40.8
Potri.010G115900 Populus trichocarpa HOM05D007637 ORTHO05D009508 2.3e-13 79.3 128 39.8
TPR.G28401 Trifolium pratense HOM05D007637 ORTHO05D009508 5.2e-13 78.2 131 39.7
SalBow3G1214 Salvia bowleyana HOM05D007637 ORTHO05D009508 8.8e-13 77.4 103 47.6
SalBow3G3066 Salvia bowleyana HOM05D007637 ORTHO05D009508 8.8e-13 77.4 103 47.6
Psat3g096920 Pisum sativum HOM05D007637 ORTHO05D009508 1.5e-12 76.6 93 48.4
TWI74G0234 Tripterygium wilfordii HOM05D007637 ORTHO05D009508 1.5e-12 76.6 105 49.5
Eucgr.J01537 Eucalyptus grandis HOM05D007637 ORTHO05D009508 2.6e-12 75.9 134 44.0
PGSC0003DMG400030637 Solanum tuberosum HOM05D007637 ORTHO05D009508 2.6e-12 75.9 97 49.5
Haze_14202 Corylus avellana HOM05D007637 ORTHO05D009508 3.4e-12 75.5 84 46.4
Thecc.04G124800 Theobroma cacao HOM05D007637 ORTHO05D009508 9.8e-12 73.9 109 44.0
Actinidia31983 Actinidia chinensis HOM05D007637 ORTHO05D009508 1.3e-11 73.6 86 52.3
Eucgr.J01536 Eucalyptus grandis HOM05D007637 ORTHO05D009508 1.7e-11 73.2 134 42.5
Solyc02g091193.1 Solanum lycopersicum HOM05D007637 ORTHO05D009508 2.8e-11 72.4 98 49.0
Nitab4.5_0005700g0020 Nicotiana tabacum HOM05D007637 ORTHO05D009508 8.3e-11 70.9 94 42.6
MD09G1259200 Malus domestica HOM05D007637 ORTHO05D009508 1.1e-10 70.5 127 40.2
Nitab4.5_0002456g0080 Nicotiana tabacum HOM05D007637 ORTHO05D009508 2.4e-10 69.3 77 49.4
Ciclev10017462m.g Citrus clementina HOM05D007637 ORTHO05D009508 4.1e-10 68.6 128 39.1
TWI79G1694 Tripterygium wilfordii HOM05D007637 ORTHO05D009508 4.1e-10 68.6 128 37.5
Actinidia33410 Actinidia chinensis HOM05D007637 ORTHO05D009508 7.0e-10 67.8 109 42.2
arahy.Tifrunner.gnm1.ann1.AC9JIC Arachis hypogaea HOM05D007637 ORTHO05D009508 9.1e-10 67.4 91 41.8
arahy.Tifrunner.gnm1.ann1.BY2X14 Arachis hypogaea HOM05D007637 ORTHO05D009508 9.1e-10 67.4 91 41.8
COL.COLO4_38443 Corchorus olitorius HOM05D007637 ORTHO05D009508 9.1e-10 67.4 100 48.0
ATR0326G042 Amborella trichopoda HOM05D007637 ORTHO05D009508 1.2e-09 67.0 109 43.1
Lsat_1_v5_gn_4_155320 Lactuca sativa HOM05D007637 ORTHO05D009508 1.2e-09 67.0 119 38.7
Eucgr.J01538 Eucalyptus grandis HOM05D007637 ORTHO05D009508 1.6e-09 66.6 133 42.1
Lalb_Chr17g0336081 Lupinus albus HOM05D007637 ORTHO05D009508 1.6e-09 66.6 98 39.8
Rhsim09G0068300 Rhododendron simsii HOM05D007637 ORTHO05D009508 5.9e-09 64.7 129 37.2
HanXRQChr09g0262421 Helianthus annuus HOM05D007637 ORTHO05D009508 7.7e-09 64.3 127 38.6
HanXRQChr09g0262411 Helianthus annuus HOM05D007637 ORTHO05D009508 1.3e-08 63.5 124 38.7
Lalb_Chr17g0336031 Lupinus albus HOM05D007637 ORTHO05D009508 2.2e-08 62.8 100 39.0
PGSC0003DMG400010395 Solanum tuberosum HOM05D007637 ORTHO05D009508 1.1e-07 60.5 126 34.9
Eucgr.G02214 Eucalyptus grandis HOM05D007637 ORTHO05D009508 3.2e-07 58.9 90 36.7
HanXRQChr11g0325281 Helianthus annuus HOM05D007637 ORTHO05D009508 3.2e-07 58.9 125 35.2
CiPaw.05G246900 Carya illinoinensis HOM05D007637 ORTHO05D009508 9.4e-07 57.4 98 37.8
Nitab4.5_0002456g0100 Nicotiana tabacum HOM05D007637 ORTHO05D009508 3.6e-06 55.5 33 66.7
QL02p049171 Quercus lobata HOM05D007637 ORTHO05D009508 3.6e-06 55.5 48 58.3
QL01p002403 Quercus lobata HOM05D006556 ORTHO05D008146 4.7e-06 55.1 78 37.2
Nitab4.5_0002644g0060 Nicotiana tabacum HOM05D007637 ORTHO05D009508 8.0e-06 54.3 79 43.0


User provided reference genes

Program Settings