Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.4e-60 235.3 123 100.0
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.0e-58 229.9 123 96.7
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 2.6e-54 215.3 120 93.3
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-52 207.6 123 88.6
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-52 207.6 123 88.6
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 6.0e-51 204.1 122 87.7
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 6.0e-51 204.1 123 87.8
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 4.3e-49 198.0 123 85.4
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 4.8e-48 194.5 122 82.8
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 2.4e-47 192.2 122 82.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 1.2e-46 189.9 114 84.2
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 2.0e-46 189.1 121 82.6
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 2.0e-46 189.1 121 82.6
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 2.6e-46 188.7 121 82.6
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 2.6e-46 188.7 121 82.6
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.6e-46 188.7 117 83.8
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.4e-46 188.3 123 80.5
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.4e-46 188.3 123 80.5
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.3e-45 186.4 121 81.8
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 2.9e-45 185.3 112 83.9
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 3.8e-45 184.9 114 84.2
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 3.8e-45 184.9 114 82.5
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 8.4e-45 183.7 112 83.0
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 8.4e-45 183.7 114 79.8
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 1.1e-44 183.3 126 77.0
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.1e-44 183.3 112 83.0
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.2e-44 181.8 116 82.8
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.2e-44 181.8 116 82.8
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 3.2e-44 181.8 117 80.3
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 9.3e-44 180.3 118 78.8
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 9.3e-44 180.3 114 81.6
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 9.3e-44 180.3 120 78.3
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.2e-43 179.9 123 74.8
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 2.1e-43 179.1 120 75.8
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 2.1e-43 179.1 117 79.5
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 2.1e-43 179.1 127 75.6
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 3.5e-43 178.3 123 74.8
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 3.5e-43 178.3 114 79.8
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 3.5e-43 178.3 121 75.2
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 3.5e-43 178.3 121 76.0
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 1.3e-42 176.4 112 82.1
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 1.3e-42 176.4 113 79.6
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.3e-42 176.4 114 78.9
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 1.8e-42 176.0 120 76.7
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 3.9e-42 174.9 116 78.4
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 5.1e-42 174.5 110 79.1
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 6.7e-42 174.1 114 77.2
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 6.7e-42 174.1 114 78.9
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 6.7e-42 174.1 117 77.8
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 8.7e-42 173.7 121 74.4
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 8.7e-42 173.7 112 76.8
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 1.1e-41 173.3 117 74.4
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 1.9e-41 172.6 123 72.4
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 2.5e-41 172.2 117 76.9
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 2.5e-41 172.2 117 77.8
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 2.5e-41 172.2 117 72.6
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 2.5e-41 172.2 116 77.6
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 3.3e-41 171.8 119 74.8
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.6e-40 169.5 121 71.9
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 2.8e-40 168.7 117 73.5
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 3.7e-40 168.3 120 73.3
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 1.1e-39 166.8 117 74.4
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 1.4e-39 166.4 116 72.4
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 4.0e-39 164.9 121 71.1
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 4.0e-39 164.9 119 70.6
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 1.2e-38 163.3 110 73.6
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 2.6e-38 162.2 123 71.5
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.5e-38 161.4 110 80.0
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 5.8e-38 161.0 113 72.6
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 2.2e-37 159.1 112 73.2
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 4.9e-37 157.9 115 71.3
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 8.4e-37 157.1 119 68.9
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 4.2e-36 154.8 119 67.2
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.3e-36 153.7 102 74.5
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 3.5e-35 151.8 118 65.3
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 4.6e-35 151.4 122 68.0
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.3e-34 149.8 115 65.2
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.8e-34 149.4 101 76.2
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 5.1e-34 147.9 109 66.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.5e-33 145.6 116 67.2
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 4.3e-33 144.8 103 68.0
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 4.3e-33 144.8 103 67.0
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 4.3e-33 144.8 113 66.4
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.6e-33 144.4 102 72.5
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 9.6e-33 143.7 103 67.0
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 1.6e-32 142.9 114 67.5
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 2.1e-32 142.5 94 73.4
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 1.4e-31 139.8 114 64.9
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.4e-31 139.8 78 91.0
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.3e-29 133.3 94 74.5
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.9e-29 131.3 78 84.6
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.9e-29 131.3 78 84.6
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 2.5e-28 129.0 110 60.0
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 4.2e-28 128.3 115 60.0
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 5.5e-28 127.9 122 56.6
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 9.3e-28 127.1 76 86.8
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 9.3e-28 127.1 76 84.2
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 6.0e-27 124.4 92 66.3
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 6.0e-27 124.4 89 69.7
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 1.3e-26 123.2 89 68.5
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 3.9e-26 121.7 85 72.9
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 3.3e-25 118.6 114 55.3
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.3e-25 118.6 116 57.8
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 3.3e-25 118.6 116 57.8
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.3e-24 116.7 75 77.3
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 1.3e-24 116.7 95 65.3
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 6.9e-23 110.9 69 81.2
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 5.0e-21 104.8 108 51.9
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 5.0e-21 104.8 74 67.6
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.9e-20 102.8 72 68.1
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.2e-20 102.1 90 65.6
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 3.2e-20 102.1 71 67.6
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 4.2e-20 101.7 73 67.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 4.2e-20 101.7 73 67.1
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 5.5e-20 101.3 59 84.7
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.5e-20 101.3 59 84.7
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.2e-20 100.9 112 47.3
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 67.6
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 67.6
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 1.2e-19 100.1 73 65.8
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 1.6e-19 99.8 103 45.6
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 2.1e-19 99.4 108 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 1.9e-17 92.8 106 44.3
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 2.5e-17 92.4 72 56.9
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 1.3e-16 90.1 103 46.6
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 5.9e-14 81.3 97 42.3
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 1.4e-12 76.6 62 64.5
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 6.1e-11 71.2 43 83.7
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.4e-09 64.3 55 56.4
FAN06G1951 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.0e-07 57.8 102 37.3


User provided reference genes

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