Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.3e-186 656.4 356 100.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 3.8e-138 495.4 400 72.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 5.4e-137 491.5 365 75.1
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.0e-131 473.0 365 74.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.4e-131 472.2 365 74.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.2e-128 463.8 366 74.0
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.4e-123 445.7 365 70.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 4.8e-117 425.2 364 66.2
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.1e-116 422.5 366 67.8
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.4e-115 419.1 366 65.3
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 5.0e-114 415.2 358 65.6
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 8.5e-114 414.5 367 67.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.5e-113 412.9 365 64.9
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.2e-112 410.6 365 64.1
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.6e-112 409.1 364 69.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 3.6e-112 409.1 365 64.4
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.9e-112 407.9 365 66.0
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.9e-112 407.9 365 66.0
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.1e-111 405.2 363 65.8
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 6.7e-111 404.8 361 64.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 6.7e-111 404.8 365 64.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.1e-110 404.1 366 65.6
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-110 404.1 365 64.7
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.3e-110 402.1 365 64.9
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.8e-109 399.4 365 64.7
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 6.3e-109 398.3 365 64.7
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 2.4e-108 396.4 364 62.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.1e-108 396.0 364 64.3
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 4.1e-108 395.6 363 65.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 5.3e-108 395.2 364 63.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 5.3e-108 395.2 372 62.9
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 6.9e-108 394.8 364 64.0
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.2e-107 394.0 362 61.9
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.5e-107 393.7 366 62.8
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.5e-107 393.7 364 62.9
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.0e-107 393.3 372 61.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.0e-107 393.3 365 61.9
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.6e-107 392.9 366 65.0
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.5e-107 392.1 364 61.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.3e-106 390.6 367 62.7
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.7e-106 390.2 366 62.0
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.2e-106 389.8 366 61.7
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.2e-105 386.0 365 64.1
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 5.5e-105 385.2 365 61.6
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.2e-104 384.0 364 63.7
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.2e-104 384.0 364 62.9
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.8e-103 380.2 356 63.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.9e-103 379.0 365 60.8
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 6.7e-103 378.3 362 61.6
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.6e-102 376.3 380 59.2
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 4.4e-102 375.6 364 60.2
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 5.7e-102 375.2 363 60.6
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 7.4e-102 374.8 356 63.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.4e-102 374.8 365 60.5
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.2e-101 373.2 367 59.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 8.2e-101 371.3 422 55.0
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 9.1e-100 367.9 363 61.2
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.6e-99 367.1 364 61.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.0e-99 366.7 364 61.3
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.6e-99 366.3 364 61.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 3.5e-99 365.9 367 58.9
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 3.5e-99 365.9 362 61.3
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-98 364.4 366 60.1
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 5.0e-98 362.1 364 60.4
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.6e-96 357.1 367 58.9
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 2.7e-96 356.3 363 60.1
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.7e-96 355.5 364 60.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.7e-96 355.5 364 60.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 6.1e-96 355.1 365 59.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.8e-95 353.6 364 59.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 4.0e-95 352.4 363 60.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 5.2e-95 352.1 363 60.1
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 6.7e-95 351.7 363 59.8
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 8.8e-95 351.3 363 59.8
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.1e-94 350.9 365 59.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.4e-94 349.0 377 58.9
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 7.5e-94 348.2 362 59.4
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 7.5e-94 348.2 362 59.4
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.4e-92 344.0 366 59.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.8e-92 343.6 364 58.2
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 3.1e-92 342.8 360 58.6
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.2e-91 340.9 366 56.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.6e-91 340.5 364 58.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.0e-90 337.8 364 58.0
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.5e-89 334.0 362 57.2
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 7.2e-89 331.6 352 57.4
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.3e-87 326.6 367 58.6
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 3.0e-87 326.2 352 56.5
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 6.8e-87 325.1 303 63.7
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 2.0e-86 323.6 356 56.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 3.7e-85 319.3 363 56.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 4.8e-85 318.9 353 56.9
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 3.1e-84 316.2 384 53.6
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 4.5e-83 312.4 362 55.0
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 6.8e-79 298.5 356 52.2
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.7e-77 293.9 391 48.6
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 4.5e-75 285.8 363 51.2
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.5e-73 280.0 266 61.7
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.4e-63 247.7 344 48.0
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.6e-59 234.2 231 61.9
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 8.6e-58 228.4 247 56.7
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 4.3e-57 226.1 241 56.8
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.2e-55 219.2 214 59.3
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 9.8e-54 214.9 207 61.8
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 5.4e-52 209.1 166 71.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 9.2e-52 208.4 330 45.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 8.1e-48 195.3 146 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 4.0e-39 166.4 306 38.2
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.2e-38 164.9 245 46.1
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.3e-37 161.4 391 34.8
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.2e-37 160.6 233 45.9
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 3.8e-37 159.8 216 49.1
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.0e-35 152.5 146 61.0
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 6.0e-35 152.5 97 82.5
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.3e-34 150.6 215 49.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.9e-34 149.8 223 46.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.5e-30 137.9 320 34.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 7.6e-30 135.6 128 61.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.9e-28 131.0 385 31.9
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.4e-23 114.8 323 33.4
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.2e-21 107.5 101 61.4
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.8e-21 106.7 94 61.7
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.4e-20 104.0 68 77.9
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 5.5e-20 102.8 160 43.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 6.2e-16 89.4 72 68.1
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.0e-15 86.7 55 89.1
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 5.3e-15 86.3 123 48.0
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-14 85.1 220 34.5
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 7.6e-14 82.4 97 45.4
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.9e-13 80.5 83 56.6
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 6.7e-10 69.3 46 78.3
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 1.9e-09 67.8 84 50.0
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 7.4e-09 65.9 97 48.5
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-08 64.7 84 47.6


User provided reference genes

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