Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.8e-168 594.3 343 100.0
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.2e-146 521.2 341 85.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.7e-141 505.8 341 73.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.4e-136 488.8 342 73.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.6e-133 479.9 342 69.6
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.9e-131 473.0 346 69.7
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.6e-131 471.5 344 74.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.3e-130 470.3 338 68.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 9.0e-129 464.2 342 66.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.5e-128 463.4 339 67.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.0e-128 463.0 337 67.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.0e-128 463.0 339 67.3
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.2e-127 459.5 344 65.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.8e-127 458.8 343 65.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.4e-127 458.0 346 65.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.4e-127 458.0 344 68.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.1e-126 457.2 346 67.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.1e-126 457.2 341 77.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.9e-126 456.4 343 67.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-126 456.4 339 65.5
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.4e-126 456.1 339 67.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.2e-126 455.7 342 74.9
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.4e-126 454.9 342 65.5
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 7.1e-126 454.5 342 66.1
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.3e-126 454.1 336 67.6
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.2e-125 453.8 425 68.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.6e-125 453.4 342 75.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.6e-125 453.4 339 67.8
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.7e-125 452.6 343 67.1
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 3.5e-125 452.2 341 69.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.6e-125 451.8 344 65.1
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 4.6e-125 451.8 339 69.9
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-125 451.4 355 63.9
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.0e-124 450.7 343 67.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.0e-124 450.7 343 66.2
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 2.3e-124 449.5 343 75.2
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 2.3e-124 449.5 339 68.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.3e-124 449.5 342 75.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-124 449.5 338 71.0
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.9e-124 448.7 339 70.2
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.1e-124 448.4 342 64.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.7e-124 448.0 342 64.6
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.1e-123 447.2 342 67.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-123 446.8 341 64.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.5e-123 446.8 339 65.2
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.5e-123 446.8 338 70.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.5e-123 446.0 338 74.9
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-123 446.0 341 66.0
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.5e-123 446.0 343 70.3
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 5.6e-123 444.9 344 64.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 9.6e-123 444.1 340 67.6
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.7e-122 442.2 343 68.8
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.8e-122 441.8 342 67.5
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.8e-122 441.8 345 64.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 4.8e-122 441.8 364 64.0
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 6.2e-122 441.4 343 74.1
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.1e-121 440.7 337 66.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.1e-121 440.7 346 63.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.4e-121 440.3 346 65.3
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.4e-121 440.3 342 62.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.8e-121 439.9 352 61.6
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.1e-121 439.1 344 75.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 4.0e-121 438.7 345 64.1
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-121 438.7 342 63.2
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.3e-121 438.3 342 65.5
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-120 437.2 338 73.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.2e-120 437.2 337 73.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 2.0e-120 436.4 345 73.3
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.4e-120 435.6 344 67.2
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 3.4e-120 435.6 342 64.0
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 5.8e-120 434.9 344 74.4
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 7.6e-120 434.5 340 73.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.9e-120 434.1 345 73.6
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-119 433.7 343 67.9
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.9e-119 432.6 350 64.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.2e-118 429.1 346 65.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.2e-118 429.1 346 67.1
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 3.2e-118 429.1 342 64.9
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 5.5e-118 428.3 345 73.0
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 2.1e-117 426.4 342 64.3
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.9e-117 424.5 339 64.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-116 424.1 344 64.8
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.0e-116 424.1 344 65.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.0e-116 424.1 337 62.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.1e-115 420.6 343 71.1
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.9e-115 419.9 341 67.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.5e-115 419.5 340 63.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 9.6e-115 417.5 338 62.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.7e-114 415.6 339 62.8
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.2e-114 414.5 339 59.3
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 8.2e-114 414.5 353 59.2
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 8.2e-114 414.5 353 59.2
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.4e-113 413.7 342 61.1
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.4e-113 412.9 339 59.3
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.4e-113 412.9 326 62.6
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.2e-112 410.6 336 58.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.0e-112 409.8 341 63.0
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.5e-112 408.7 341 62.2
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 5.8e-112 408.3 351 63.8
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.8e-112 408.3 337 59.9
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-111 407.1 337 59.6
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.7e-111 406.8 339 61.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.8e-111 405.6 441 51.7
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.4e-110 403.7 349 57.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.9e-110 403.3 352 60.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 9.3e-110 401.0 345 58.8
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.6e-109 400.2 344 59.6
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.7e-109 399.4 339 60.2
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 4.6e-109 398.7 344 60.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 6.0e-109 398.3 344 60.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-108 397.5 339 59.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.0e-108 396.0 339 59.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.0e-108 396.0 338 60.7
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.9e-108 395.6 344 63.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 5.1e-108 395.2 340 59.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.7e-108 394.8 344 64.2
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 8.7e-108 394.4 303 66.7
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 3.3e-107 392.5 341 57.5
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.4e-107 391.3 338 57.7
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.4e-105 387.1 270 73.0
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 4.5e-104 382.1 338 58.0
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.7e-104 381.3 358 67.3
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 7.7e-104 381.3 336 55.7
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.5e-102 376.3 358 59.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.0e-100 370.9 294 75.9
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.1e-100 368.6 337 54.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 5.7e-99 365.2 302 63.2
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.2e-98 363.2 350 56.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.4e-97 360.5 338 56.5
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.1e-97 359.0 295 62.0
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-96 357.5 289 64.4
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.5e-96 357.1 289 74.4
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 5.9e-96 355.1 339 51.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.3e-92 343.2 340 52.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 8.8e-92 341.3 335 53.4
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.5e-91 340.5 291 60.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 7.7e-88 328.2 282 72.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.2e-86 322.8 342 52.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.6e-85 320.5 282 72.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.2e-78 296.2 171 84.2
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.2e-78 295.0 296 60.1
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.8e-74 282.3 336 47.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.1e-73 279.3 338 43.5
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.5e-72 276.2 240 62.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.3e-71 274.2 277 55.6
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-71 273.5 240 58.3
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 8.5e-71 271.6 341 40.5
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 4.2e-70 269.2 236 69.1
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.6e-69 267.3 240 72.1
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.6e-69 267.3 241 63.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.7e-69 265.8 223 65.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.0e-68 264.6 334 47.6
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.8e-68 263.8 144 84.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.6e-67 260.0 274 49.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.4e-67 259.6 241 58.5
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.4e-65 252.3 274 50.4
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 3.5e-64 249.6 236 65.7
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-63 247.3 240 56.7
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 3.8e-63 246.1 339 37.5
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.8e-60 235.3 129 86.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 8.0e-53 211.8 293 41.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.2e-49 198.4 120 78.3
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 3.9e-47 193.0 271 43.5
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.5e-46 190.3 102 86.3
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-41 174.9 115 76.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-30 138.3 102 66.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-28 131.3 91 70.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.8e-27 125.9 339 27.7
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.8e-24 115.5 90 67.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-23 113.6 90 65.6
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.0e-19 100.9 54 77.8
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.9e-19 98.6 52 86.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.3e-14 83.2 106 34.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 6.4e-10 69.3 133 36.1
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 3.2e-09 67.0 45 68.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 9.3e-09 65.5 75 52.0
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 9.6e-06 55.5 142 29.6


User provided reference genes

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