Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 0.0e+00 1355.5 693 100.0
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.6e-270 936.0 694 72.3
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.1e-270 935.6 686 69.7
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 3.8e-259 898.3 696 69.1
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 7.9e-241 837.4 662 64.2
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 5.1e-240 834.7 698 63.6
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.2e-233 813.5 677 62.9
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 3.5e-233 812.0 597 69.8
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 3.4e-228 795.4 700 60.0
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 8.8e-224 780.8 704 60.2
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 8.2e-222 774.2 677 59.4
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 2.9e-219 765.8 697 58.8
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 8.8e-216 754.2 696 58.3
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 8.2e-214 747.7 708 57.6
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.8e-213 746.5 722 56.1
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 7.7e-212 741.1 680 58.4
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 1.3e-211 740.3 612 61.4
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 8.5e-211 737.6 584 63.2
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.2e-209 733.8 412 88.3
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 4.7e-209 731.9 679 58.9
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.4e-208 730.3 586 62.3
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 3.0e-208 729.2 590 62.2
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 4.4e-207 725.3 653 59.0
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.8e-206 722.6 679 58.8
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 8.2e-206 721.1 568 61.8
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.6e-204 716.8 606 63.2
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 1.6e-204 716.8 670 59.4
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.2e-203 713.0 678 57.7
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 5.0e-203 711.8 586 61.3
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 4.7e-201 705.3 569 62.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 6.1e-201 704.9 502 70.9
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 5.2e-200 701.8 687 55.9
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 4.8e-198 695.3 631 58.0
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 5.3e-197 691.8 614 59.1
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 2.7e-196 689.5 618 60.5
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.3e-195 687.2 678 56.3
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.2e-193 680.6 527 63.9
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 4.0e-192 675.6 644 55.7
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 5.2e-192 675.2 663 55.5
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.0e-191 673.3 663 54.3
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.8e-190 669.5 667 54.0
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 7.7e-188 661.4 583 58.1
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.3e-187 660.6 633 56.2
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.5e-186 656.4 713 50.5
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.1e-185 651.7 649 55.6
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 3.0e-184 649.4 571 60.8
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 5.2e-184 648.7 653 52.7
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 7.8e-180 634.8 586 56.5
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.0e-179 634.4 500 64.8
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 2.5e-178 629.8 517 62.3
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.3e-171 607.4 671 49.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.3e-171 606.7 671 51.6
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 7.3e-170 601.7 447 63.8
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 8.0e-169 598.2 670 49.7
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 1.4e-168 597.4 501 60.5
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 6.6e-163 578.6 675 50.5
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.9e-162 577.0 675 49.0
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.2e-161 574.3 682 47.1
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 2.1e-161 573.5 527 60.0
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 4.4e-159 565.8 539 55.8
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 9.9e-159 564.7 617 51.5
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 7.1e-157 558.5 651 48.1
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 9.2e-157 558.1 410 67.8
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 3.9e-155 552.7 419 63.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.3e-154 549.7 606 52.8
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.6e-153 547.4 492 58.1
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 4.0e-152 542.7 527 55.0
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 2.0e-151 540.4 606 49.5
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.7e-150 537.3 604 49.8
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 4.9e-150 535.8 640 47.2
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 8.4e-150 535.0 492 57.3
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 7.8e-148 528.5 605 48.9
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 6.6e-147 525.4 424 61.6
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 2.5e-146 523.5 604 48.0
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 4.3e-146 522.7 536 53.9
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 1.8e-144 517.3 605 47.8
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 6.9e-144 515.4 607 48.1
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 6.9e-144 515.4 607 48.1
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 1.5e-143 514.2 598 45.5
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 5.8e-143 512.3 484 54.1
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 9.3e-141 505.0 605 47.8
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 3.5e-140 503.1 605 47.6
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 4.6e-140 502.7 497 52.1
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 3.9e-139 499.6 510 54.3
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 4.8e-137 492.7 630 45.2
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.2e-134 483.8 294 78.6
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 3.1e-128 463.4 606 44.6
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.3e-126 458.0 539 49.9
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 2.5e-122 443.7 388 60.1
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 1.1e-120 438.3 576 45.5
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 4.5e-119 433.0 596 44.5
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.4e-117 427.9 610 41.3
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 5.1e-115 419.5 509 50.9
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.3e-113 414.8 594 43.3
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-113 414.8 289 65.4
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 6.3e-113 412.5 326 60.7
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 2.4e-112 410.6 345 59.4
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.4e-104 384.8 571 42.9
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 2.2e-97 360.9 488 43.9
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.9e-93 347.8 278 61.2
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.8e-88 331.3 253 76.7
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.9e-78 297.4 315 55.6
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 5.4e-72 276.6 317 53.9
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.7e-71 274.2 219 69.4
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 2.3e-54 218.0 206 60.7
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 5.6e-53 213.4 271 50.9
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 4.9e-49 200.3 242 56.2
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.2e-47 195.7 230 56.5
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 6.0e-31 140.2 274 30.7
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 2.0e-26 125.2 262 29.8
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 6.4e-25 120.2 129 57.4
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 1.1e-19 102.8 81 66.7
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-16 91.7 59 67.8
Actinidia18119 Actinidia chinensis HOM05D000912 ORTHO05D001232 5.1e-14 84.0 108 54.6
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 5.6e-13 80.5 68 66.2
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 2.8e-12 78.2 55 54.5
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.1e-08 66.2 42 61.9
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.8e-06 58.9 37 67.6


User provided reference genes

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