Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0057100 Rhododendron simsii HOM05D000808 ORTHO05D000863 3.1e-53 211.5 101 100.0
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 3.4e-20 101.7 59 81.4
Rhsim10G0056600 Rhododendron simsii HOM05D000808 ORTHO05D000863 3.4e-20 101.7 56 87.5
Rhsim10G0056800 Rhododendron simsii HOM05D000808 ORTHO05D000863 4.5e-20 101.3 59 81.4
vmacro19922 Vaccinium macrocarpon HOM05D000808 ORTHO05D000863 3.6e-17 91.7 56 78.6
Actinidia28062 Actinidia chinensis HOM05D000808 ORTHO05D000863 1.0e-16 90.1 59 69.5
CSS0036795 Camellia sinensis var. sinensis HOM05D000808 ORTHO05D000863 5.1e-16 87.8 59 67.8
Hma1.2p1_0217F.1_g091840 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 6.7e-16 87.4 59 66.1
Dinv24207 Davidia involucrata HOM05D000808 ORTHO05D000863 9.7e-15 83.6 59 62.7
FvH4_5g30930 Fragaria vesca HOM05D000808 ORTHO05D000863 1.1e-13 80.1 57 61.4
Haze_10640 Corylus avellana HOM05D000808 ORTHO05D000863 1.4e-13 79.7 59 66.1
FAN08G0934 Fragaria x ananassa HOM05D000808 ORTHO05D000863 1.4e-13 79.7 57 59.6
MD15G1411700 Malus domestica HOM05D000808 ORTHO05D000863 1.4e-13 79.7 59 59.3
FAN13G1745 Fragaria x ananassa HOM05D000808 ORTHO05D000863 2.4e-13 79.0 57 59.6
MD08G1221000 Malus domestica HOM05D000808 ORTHO05D000863 2.4e-13 79.0 59 57.6
FAN18G1470 Fragaria x ananassa HOM05D000808 ORTHO05D000863 4.1e-13 78.2 57 59.6
Prupe.1G557900 Prunus persica HOM05D000808 ORTHO05D000863 5.3e-13 77.8 59 57.6
FAN04G0791 Fragaria x ananassa HOM05D000808 ORTHO05D000863 7.0e-13 77.4 57 57.9
RcHm_v2.0_Chr7g0226241 Rosa chinensis HOM05D000808 ORTHO05D000863 5.9e-12 74.3 59 59.3
GSVIVG01029794001 Vitis vinifera HOM05D000808 ORTHO05D000863 7.7e-12 73.9 59 55.9
QL11p019837 Quercus lobata HOM05D000808 ORTHO05D000863 1.7e-11 72.8 59 59.3
Lj9A320T32 Lonicera japonica HOM05D000808 ORTHO05D000863 2.2e-11 72.4 59 59.3
Lju1163A0G50 Lonicera japonica HOM05D000808 ORTHO05D000863 3.8e-11 71.6 59 59.3
TAR376G0857 Trochodendron aralioides HOM05D000808 ORTHO05D000863 3.8e-11 71.6 59 57.6
Gohir.A03G172600 Gossypium hirsutum HOM05D000808 ORTHO05D000863 8.5e-11 70.5 61 50.8
Gohir.D02G195800 Gossypium hirsutum HOM05D000808 ORTHO05D000863 8.5e-11 70.5 61 50.8
Gorai.005G218800 Gossypium raimondii HOM05D000808 ORTHO05D000863 8.5e-11 70.5 61 50.8
CiPaw.05G038000 Carya illinoinensis HOM05D000808 ORTHO05D000863 1.1e-10 70.1 59 57.6
Medtr2g008590 Medicago truncatula HOM05D000808 ORTHO05D000863 1.5e-10 69.7 59 57.6
DCAR_021848 Daucus carota HOM05D000808 ORTHO05D000863 2.5e-10 68.9 59 54.2
Nn5g29039 Nelumbo nucifera HOM05D000808 ORTHO05D000863 4.2e-10 68.2 59 55.9
MBI02_g30887_MAGBIO Magnolia biondii HOM05D000808 ORTHO05D000863 5.5e-10 67.8 59 50.8
Duzib132G0787 Durio zibethinus HOM05D000808 ORTHO05D000863 7.2e-10 67.4 59 50.8
SGA_v2.0_scaffold83G26285 Striga asiatica HOM05D000808 ORTHO05D000863 9.4e-10 67.0 59 50.8
Zm00001eb401240 Zea mays HOM05D000808 ORTHO05D000863 9.4e-10 67.0 61 55.7
Os03g0192500 Oryza sativa ssp. japonica HOM05D000808 ORTHO05D000863 1.2e-09 66.6 61 55.7
PSO541G5282 Papaver somniferum HOM05D000808 ORTHO05D000863 1.2e-09 66.6 58 55.2
Thecc.02G142000 Theobroma cacao HOM05D000808 ORTHO05D000863 1.2e-09 66.6 61 49.2
PGSC0003DMG400012566 Solanum tuberosum HOM05D000808 ORTHO05D000863 2.1e-09 65.9 59 49.2
TPR.G13615 Trifolium pratense HOM05D000808 ORTHO05D000863 2.1e-09 65.9 59 54.2
CANSAT11G0349 Cannabis sativa HOM05D000808 ORTHO05D000863 2.7e-09 65.5 57 57.9
Solyc01g105020.3 Solanum lycopersicum HOM05D000808 ORTHO05D000863 3.6e-09 65.1 59 49.2
Sopen01g047550 Solanum pennellii HOM05D000808 ORTHO05D000863 3.6e-09 65.1 59 49.2
Os10g0370000 Oryza sativa ssp. japonica HOM05D000808 ORTHO05D000863 8.0e-09 63.9 61 52.5
Ca_00126_v3 Cicer arietinum L. HOM05D000808 ORTHO05D000863 1.4e-08 63.2 59 54.2
Oeu007950.1 Olea europaea HOM05D000808 ORTHO05D000863 1.4e-08 63.2 59 50.8
Aqoxy6G00573 Aquilegia oxysepala HOM05D000808 ORTHO05D000863 2.3e-08 62.4 59 50.8
Cc02_g21730 Coffea canephora HOM05D000808 ORTHO05D000863 2.3e-08 62.4 70 50.0
HPP92_009237 Vanilla planifolia HOM05D000808 ORTHO05D000863 2.3e-08 62.4 59 52.5
Nitab4.5_0003434g0060 Nicotiana tabacum HOM05D000808 ORTHO05D000863 3.0e-08 62.0 57 49.1
Migut.B00626 Erythranthe guttata HOM05D000808 ORTHO05D000863 4.0e-08 61.6 61 44.3
THA.LOC104807162 Tarenaya hassleriana HOM05D000808 ORTHO05D000863 5.2e-08 61.2 58 50.0
Zm00001eb223950 Zea mays HOM05D000808 ORTHO05D000863 5.2e-08 61.2 61 49.2
ATR0564G392 Amborella trichopoda HOM05D000808 ORTHO05D000863 6.7e-08 60.8 59 50.8
Lj6g0023358 Lotus japonicus HOM05D000808 ORTHO05D000863 8.8e-08 60.5 59 50.8
Cpa.g.sc793.1 Carica papaya HOM05D000808 ORTHO05D000863 1.1e-07 60.1 89 41.6
Nitab4.5_0002865g0010 Nicotiana tabacum HOM05D000808 ORTHO05D000863 1.1e-07 60.1 57 47.4
Phvul.006G207400 Phaseolus vulgaris HOM05D000808 ORTHO05D000863 1.1e-07 60.1 57 49.1
Peaxi162Scf00001g00027 Petunia axillaris HOM05D000808 ORTHO05D000863 2.0e-07 59.3 59 44.1
Lalb_Chr15g0090481 Lupinus albus HOM05D000808 ORTHO05D000863 2.6e-07 58.9 59 50.8
VMungo0540G0817 Vigna mungo HOM05D000808 ORTHO05D000863 2.6e-07 58.9 57 49.1
Psat1g216960 Pisum sativum HOM05D000808 ORTHO05D000863 3.3e-07 58.5 59 50.8
arahy.Tifrunner.gnm1.ann1.PSG2M4 Arachis hypogaea HOM05D000808 ORTHO05D000863 7.5e-07 57.4 57 47.4
CDE10G0281 Ceratophyllum demersum HOM05D000808 ORTHO05D000863 7.5e-07 57.4 61 47.5
COL.COLO4_08317 Corchorus olitorius HOM05D003891 ORTHO05D000863 7.5e-07 57.4 55 52.7
CAN.G523.88 Capsicum annuum HOM05D000808 ORTHO05D000863 9.7e-07 57.0 59 42.4
ECA234G0410 Erigeron canadensis HOM05D000808 ORTHO05D000863 9.7e-07 57.0 61 41.0
Oeu026169.4 Olea europaea HOM05D000808 ORTHO05D000863 1.3e-06 56.6 59 44.1
SalBow5G5523 Salvia bowleyana HOM05D000808 ORTHO05D000863 1.3e-06 56.6 59 42.4
arahy.Tifrunner.gnm1.ann1.J1JTDU Arachis hypogaea HOM05D000808 ORTHO05D000863 2.2e-06 55.8 57 45.6
Glyma.15G052300 Glycine max HOM05D000808 ORTHO05D000863 2.8e-06 55.5 59 44.1
HanXRQChr10g0292641 Helianthus annuus HOM05D000808 ORTHO05D000863 2.8e-06 55.5 61 42.6
SEGI_25525 Sequoiadendron giganteum HOM05D000808 ORTHO05D000863 3.7e-06 55.1 59 49.2
PGR142G0261 Punica granatum HOM05D000808 ORTHO05D000863 4.8e-06 54.7 59 49.2
CDE10G0864 Ceratophyllum demersum HOM05D038533 ORTHO05D043860 6.3e-06 54.3 60 46.7


User provided reference genes

Program Settings