Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 5.9e-67 257.3 122 100.0
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 8.9e-47 190.3 127 78.0
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.4e-46 188.0 127 76.4
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 1.5e-41 172.9 127 66.1
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.9e-41 172.6 127 66.1
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 5.6e-41 171.0 127 64.6
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 5.6e-41 171.0 127 67.7
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 8.1e-40 167.2 124 64.5
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 8.1e-40 167.2 124 64.5
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 2.3e-39 165.6 127 65.4
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 5.2e-39 164.5 126 64.3
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 1.2e-38 163.3 128 63.3
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.6e-38 162.2 127 63.8
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.4e-38 161.4 123 65.9
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 9.9e-38 160.2 128 61.7
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 9.9e-38 160.2 127 61.4
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.2e-37 159.1 128 62.5
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 2.2e-37 159.1 126 61.1
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 4.9e-37 157.9 128 61.7
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 4.9e-37 157.9 128 61.7
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 4.9e-37 157.9 127 59.8
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 4.9e-37 157.9 121 60.3
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 8.3e-37 157.1 128 61.7
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.4e-36 156.4 127 69.3
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 1.9e-36 156.0 124 62.9
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.2e-36 155.2 122 61.5
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 4.1e-36 154.8 128 60.2
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 7.1e-36 154.1 127 59.1
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 7.1e-36 154.1 124 59.7
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 9.2e-36 153.7 121 62.8
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.2e-35 153.3 127 58.3
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 2.7e-35 152.1 124 61.3
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 3.5e-35 151.8 123 58.5
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.5e-35 151.8 127 56.7
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 4.6e-35 151.4 125 61.6
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 6.0e-35 151.0 127 56.7
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 1.3e-34 149.8 127 57.5
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.3e-34 149.1 124 57.3
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 3.0e-34 148.7 122 59.0
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 3.9e-34 148.3 125 56.0
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 6.6e-34 147.5 125 59.2
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 6.6e-34 147.5 127 56.7
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 6.6e-34 147.5 121 59.5
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 3.3e-33 145.2 123 59.3
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 3.3e-33 145.2 122 59.0
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.3e-33 145.2 128 55.5
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 3.3e-33 145.2 127 55.1
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 3.3e-33 145.2 127 59.1
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 4.3e-33 144.8 127 58.3
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 5.6e-33 144.4 120 59.2
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 1.2e-32 143.3 125 57.6
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.2e-32 143.3 124 57.3
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 2.1e-32 142.5 127 54.3
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 2.1e-32 142.5 124 54.8
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 2.8e-32 142.1 128 55.5
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 3.6e-32 141.7 125 54.4
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 4.7e-32 141.4 123 55.3
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 4.7e-32 141.4 123 56.1
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 6.2e-32 141.0 123 56.1
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 6.2e-32 141.0 125 56.8
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 8.1e-32 140.6 119 55.5
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 8.1e-32 140.6 124 53.2
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 2.4e-31 139.0 125 56.0
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 4.0e-31 138.3 124 55.6
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 6.8e-31 137.5 125 54.4
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 1.2e-30 136.7 126 53.2
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 1.2e-30 136.7 124 55.6
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 1.5e-30 136.3 103 62.1
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 1.5e-30 136.3 123 54.5
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 1.5e-30 136.3 128 54.7
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 2.0e-30 136.0 126 53.2
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 2.6e-30 135.6 126 54.0
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 2.6e-30 135.6 124 54.8
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.6e-30 135.6 124 54.8
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 3.4e-30 135.2 125 53.6
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 3.4e-30 135.2 125 53.6
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 4.4e-30 134.8 128 53.9
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 4.4e-30 134.8 125 52.8
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 4.4e-30 134.8 125 52.8
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 5.8e-30 134.4 123 51.2
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 5.8e-30 134.4 123 51.2
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 5.8e-30 134.4 130 56.2
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 7.6e-30 134.0 128 53.9
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 7.6e-30 134.0 124 54.8
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 7.6e-30 134.0 125 53.6
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 9.9e-30 133.7 125 52.8
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 2.2e-29 132.5 125 52.8
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 2.2e-29 132.5 126 56.3
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 4.9e-29 131.3 124 54.0
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 4.9e-29 131.3 123 52.8
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 6.4e-29 131.0 124 54.0
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 6.4e-29 131.0 123 52.8
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 1.1e-28 130.2 121 53.7
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 1.1e-28 130.2 126 53.2
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 1.1e-28 130.2 126 51.6
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 1.4e-28 129.8 129 50.4
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 1.4e-28 129.8 122 55.7
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 1.9e-28 129.4 124 54.8
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 2.4e-28 129.0 122 54.9
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 3.2e-28 128.6 129 55.0
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 4.2e-28 128.3 122 50.8
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.6e-27 126.3 128 53.1
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 2.1e-27 125.9 124 50.8
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.5e-27 125.2 127 51.2
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 3.5e-27 125.2 128 53.1
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 3.5e-27 125.2 127 50.4
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 6.0e-27 124.4 122 52.5
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 3.0e-26 122.1 127 50.4
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 1.1e-25 120.2 127 47.2
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 1.1e-25 120.2 118 50.8
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 2.5e-25 119.0 127 48.0
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 4.3e-25 118.2 122 48.4
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 7.3e-25 117.5 120 50.8
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 8.1e-24 114.0 110 53.6
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 1.1e-23 113.6 110 53.6
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 2.6e-22 109.0 77 63.6
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 7.6e-22 107.5 122 49.2
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 4.6e-19 98.2 78 61.5
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.3e-18 96.7 87 52.9
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 1.7e-18 96.3 81 53.1
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 1.9e-17 92.8 96 49.0
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 8.1e-16 87.4 134 39.6
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 1.4e-15 86.7 97 42.3
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.2e-14 83.6 62 61.3
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 4.5e-14 81.6 79 48.1
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 9.9e-14 80.5 116 42.2
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 1.3e-13 80.1 119 41.2
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 3.2e-12 75.5 68 51.5
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 8.7e-10 67.4 72 41.7
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 2.8e-08 62.4 72 47.2
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 3.7e-08 62.0 62 41.9
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 6.2e-08 61.2 128 32.8
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 1.8e-07 59.7 113 33.6
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 4.0e-07 58.5 97 39.2


User provided reference genes

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