Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.7e-274 947.6 472 100.0
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.3e-267 924.5 472 97.9
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.7e-234 815.8 474 87.8
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.4e-227 791.2 479 84.6
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 6.0e-224 780.8 474 84.0
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 7.8e-224 780.4 474 83.8
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 2.8e-221 771.9 472 83.3
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 2.3e-220 768.8 472 82.4
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 6.8e-220 767.3 472 82.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.5e-219 766.1 475 83.2
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.5e-219 766.1 472 82.6
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 2.6e-219 765.4 474 83.1
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 6.4e-218 760.8 472 81.4
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.9e-217 759.2 475 82.3
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 9.2e-217 756.9 475 81.1
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 1.6e-216 756.1 479 80.4
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 2.1e-216 755.7 479 80.4
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 2.1e-216 755.7 473 81.4
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 4.6e-216 754.6 488 77.5
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 2.3e-215 752.3 474 81.2
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 5.1e-215 751.1 472 81.4
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 8.6e-215 750.4 472 80.9
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.5e-214 749.6 476 80.0
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.9e-214 749.2 473 80.3
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.5e-214 748.8 473 80.1
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 3.6e-213 745.0 473 80.5
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.6e-213 745.0 473 79.9
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.8e-212 742.7 472 79.7
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 1.8e-212 742.7 473 80.5
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 1.8e-212 742.7 473 80.1
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 2.4e-212 742.3 472 79.4
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.0e-212 741.5 474 79.1
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 5.2e-212 741.1 520 75.4
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 5.2e-212 741.1 472 79.2
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 8.9e-212 740.3 473 80.1
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.2e-211 740.0 472 79.9
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 3.4e-211 738.4 478 78.0
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 5.8e-211 737.6 472 78.0
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 5.8e-211 737.6 472 78.8
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.3e-210 736.5 477 79.9
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 1.3e-210 736.5 470 78.9
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 1.7e-210 736.1 476 78.8
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 3.8e-210 734.9 471 79.0
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 8.4e-210 733.8 472 77.8
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 3.2e-209 731.9 494 76.7
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 7.1e-209 730.7 474 77.4
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 7.1e-209 730.7 478 77.6
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 7.1e-209 730.7 472 78.4
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 9.2e-209 730.3 472 78.8
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.2e-208 729.9 472 77.8
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.6e-208 729.6 478 77.4
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 3.5e-208 728.4 466 78.5
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 3.5e-208 728.4 473 79.7
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 3.0e-207 725.3 476 77.1
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 5.1e-207 724.5 479 77.0
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 5.6e-206 721.1 479 76.8
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 7.3e-206 720.7 473 77.6
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 4.7e-205 718.0 472 77.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 5.2e-204 714.5 445 80.7
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 9.0e-204 713.8 477 76.3
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 9.0e-204 713.8 446 80.7
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 2.0e-203 712.6 468 77.4
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 3.4e-203 711.8 475 76.4
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 4.4e-203 711.4 473 77.2
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.3e-202 709.9 471 76.4
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.1e-201 706.8 475 76.8
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.1e-201 706.8 473 76.3
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.9e-201 706.1 474 75.7
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.9e-201 706.1 473 76.1
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 2.4e-201 705.7 475 75.8
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 3.2e-201 705.3 452 80.3
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 4.2e-201 704.9 475 76.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.6e-200 703.0 471 76.6
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.6e-200 703.0 473 76.1
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 2.7e-200 702.2 471 76.4
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.1e-196 690.3 475 75.6
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 2.4e-196 689.1 473 75.7
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 5.3e-196 688.0 417 81.5
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.5e-195 686.4 428 78.7
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 7.6e-195 684.1 485 73.8
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 2.2e-194 682.6 471 77.1
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.4e-193 679.9 478 72.2
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.4e-193 679.9 480 74.4
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 2.7e-192 675.6 380 88.2
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.0e-191 672.2 478 73.4
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 5.6e-190 667.9 473 73.4
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.4e-187 658.7 375 87.7
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.6e-184 649.8 471 71.8
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 1.6e-181 639.8 388 82.2
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 3.0e-175 619.0 350 87.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 6.3e-173 611.3 413 72.6
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.1e-166 590.5 350 82.9
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 6.9e-164 581.3 373 79.1
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.7e-162 576.6 472 62.5
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 6.5e-162 574.7 474 65.8
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-161 573.9 375 77.9
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.9e-161 573.2 436 72.7
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 4.7e-160 568.5 403 68.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 3.7e-157 558.9 427 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 2.6e-150 536.2 400 65.0
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.4e-148 530.4 327 81.0
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 6.1e-144 515.0 279 88.9
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 4.1e-140 502.3 330 79.1
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.6e-136 489.2 327 75.2
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 3.0e-135 486.1 451 56.5
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.7e-134 481.9 436 62.4
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.7e-130 470.3 339 71.4
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.7e-125 452.6 254 87.0
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.7e-125 452.6 254 87.0
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 8.3e-125 451.4 350 68.3
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.6e-123 447.2 437 57.4
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 2.7e-107 393.3 430 47.4
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 2.1e-96 357.1 242 77.3
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.5e-73 281.2 336 44.6
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.1e-60 238.4 355 40.8
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 4.1e-55 219.9 420 34.8
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.1e-51 207.6 117 88.0
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.0e-50 203.8 409 35.2
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.8e-47 194.5 366 33.9
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 3.1e-47 193.7 364 33.2
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 3.1e-47 193.7 147 68.0
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 6.9e-47 192.6 102 89.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.6e-43 181.4 100 88.0
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.4e-42 178.3 161 60.9
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 9.7e-41 172.2 385 30.9
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.2e-38 165.2 96 86.5
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 1.9e-20 104.8 51 88.2
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 4.0e-18 97.1 90 58.9
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 9.1e-15 85.9 51 88.2
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 7.5e-09 66.2 38 86.8
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.7e-08 65.1 42 78.6


User provided reference genes

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