Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 4808.4 2414 100.0
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3940.2 2407 83.3
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3907.8 2400 83.0
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3766.5 2378 81.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3441.7 2253 77.6
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3381.7 2253 76.7
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3375.1 2562 70.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3343.9 2250 76.0
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3237.2 2251 73.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2895.1 2251 66.5
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2885.5 2250 66.5
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2877.0 2256 66.6
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2876.3 2259 66.4
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2863.2 2258 66.4
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2818.1 2258 65.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2815.0 2247 65.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2795.0 2255 64.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2783.8 2255 64.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2761.5 2258 64.3
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2759.6 2225 64.4
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2758.4 2255 63.5
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2751.5 2249 63.9
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2743.8 2261 63.6
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2713.7 2260 63.2
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2706.8 2256 63.7
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2706.4 2273 62.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2701.4 2256 63.5
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2691.4 2251 63.2
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2686.0 2254 62.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2676.7 2249 62.8
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2675.2 2249 62.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2674.0 2255 62.0
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2674.0 2259 62.2
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2656.7 2249 62.0
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2655.2 2248 62.2
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2652.1 2248 62.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2642.1 2262 61.8
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2622.4 2255 61.0
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2617.8 2251 61.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2608.2 2248 61.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2605.9 2252 60.6
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2599.7 2253 60.7
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2595.1 2254 60.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2578.5 2251 60.0
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2572.7 2256 60.8
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2570.4 2256 60.3
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2568.9 2257 60.5
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2563.5 2258 60.2
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2562.7 2257 60.4
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2559.3 2256 59.7
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2547.3 2261 60.7
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2546.2 2254 60.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2545.0 2257 60.6
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2543.5 2251 60.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2542.7 2255 60.0
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2538.5 2253 59.8
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2526.5 2291 59.8
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2524.2 2258 59.9
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2518.0 2259 59.6
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2512.3 2255 59.8
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2494.9 2252 59.6
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2494.9 2255 59.6
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2480.3 2250 58.9
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2472.6 2248 58.2
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2471.0 2255 59.0
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2429.4 2254 58.3
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2421.0 2251 58.0
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2405.2 2274 57.3
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2381.3 2271 57.8
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2251 58.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2251 58.0
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2369.3 2246 57.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2360.1 2263 57.6
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2352.0 2247 57.7
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2351.6 1826 66.0
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2349.3 2249 57.7
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2349.3 2249 57.7
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2339.3 2249 57.8
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2320.8 1902 63.0
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2316.2 1826 65.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2313.5 2268 56.8
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2300.8 1831 65.7
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2253.4 2251 56.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2188.7 2344 52.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2177.5 2077 58.3
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2142.1 1720 65.5
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2130.1 2260 53.3
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2091.6 2278 51.8
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2078.9 2250 52.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1808.5 1444 65.3
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1779.6 2407 43.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1690.6 1057 81.4
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1666.0 1404 63.6
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1601.6 1706 52.1
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1458.7 2384 39.4
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1452.6 2211 41.5
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1411.0 2394 38.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1343.2 1031 70.7
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1287.3 2290 36.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1286.2 1142 60.3
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1266.9 1042 62.6
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1256.1 1203 57.3
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1189.1 961 64.1
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1087.4 1425 45.5
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 2.6e-299 1033.5 820 66.6
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.1e-270 938.3 3050 27.9
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.4e-228 798.5 865 51.1
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.7e-227 794.3 752 57.0
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 9.8e-214 749.2 1368 38.3
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.1e-175 621.3 1006 40.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.3e-149 536.2 2445 25.6
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 6.1e-139 500.7 449 56.6
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.0e-107 394.0 395 55.4
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 2.0e-81 309.7 339 49.6
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 4.6e-78 298.5 760 31.6
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.3e-75 290.4 290 58.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-71 276.2 327 45.9
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.4e-65 255.8 339 44.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 7.6e-65 254.6 287 48.1
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 4.9e-56 225.3 231 51.9
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.3e-53 216.5 175 69.1
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 6.2e-51 208.4 295 41.0
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.0e-41 176.8 143 65.7
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 6.5e-40 171.8 221 44.8
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 9.7e-36 157.9 109 74.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.1e-30 138.7 530 24.9
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.0e-29 137.9 289 33.9
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-29 137.1 160 48.8
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 7.4e-28 131.7 117 56.4
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.2e-25 124.4 102 59.8
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.5e-25 122.9 106 64.2
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.7e-16 94.0 725 21.4
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.6e-14 87.4 105 42.9


User provided reference genes

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