Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 6.3e-106 387.5 202 100.0
RhsimUnG0027000 Rhododendron simsii HOM05D018356 ORTHO05D010163 8.9e-44 181.0 91 98.9
Rhsim09G0054200 Rhododendron simsii HOM05D018356 ORTHO05D339886 1.1e-12 77.8 39 100.0
Rhsim09G0054800 Rhododendron simsii HOM05D018356 ORTHO05D339147 1.1e-12 77.8 39 100.0
Rhsim01G0065100 Rhododendron simsii HOM05D018356 ORTHO05D339320 6.9e-12 75.1 41 92.7
Rhsim04G0127800 Rhododendron simsii HOM05D018356 ORTHO05D001602 1.2e-11 74.3 39 94.9
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 2.0e-11 73.6 49 75.5
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 2.0e-11 73.6 49 73.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.6e-11 73.2 49 71.4
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 2.6e-11 73.2 49 71.4
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 2.6e-11 73.2 49 71.4
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 5.8e-11 72.0 49 73.5
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.3e-10 70.9 49 69.4
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 6.5e-10 68.6 49 67.3
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 1.1e-09 67.8 49 67.3
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.1e-09 67.8 49 67.3
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.1e-09 67.8 49 67.3
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.1e-09 67.8 49 65.3
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.1e-09 67.8 49 65.3
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.4e-09 67.4 49 67.3
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 4.2e-09 65.9 49 63.3
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.1e-09 65.1 48 66.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 7.1e-09 65.1 49 67.3
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 7.1e-09 65.1 49 63.3
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 9.3e-09 64.7 63 47.6
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.6e-08 63.9 49 65.3
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.6e-08 63.9 49 65.3
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 2.1e-08 63.5 43 69.8
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 2.1e-08 63.5 49 65.3
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 2.7e-08 63.2 49 65.3
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 2.7e-08 63.2 52 55.8
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 3.5e-08 62.8 49 61.2
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 3.5e-08 62.8 40 72.5
Rhsim10G0085100 Rhododendron simsii HOM05D018356 ORTHO05D338948 3.5e-08 62.8 85 45.9
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.1e-08 62.0 48 62.5
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.9e-08 61.6 48 62.5
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.8e-07 60.5 53 58.5
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.8e-07 60.5 43 72.1
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.3e-07 60.1 49 57.1
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 2.3e-07 60.1 49 57.1
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 3.0e-07 59.7 49 57.1
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 5.1e-07 58.9 50 56.0
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 5.1e-07 58.9 50 60.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 5.1e-07 58.9 50 60.0
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 1.1e-06 57.8 68 50.0
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 1.5e-06 57.4 49 55.1
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.5e-06 57.4 49 61.2
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 3.3e-06 56.2 49 55.1
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 3.3e-06 56.2 49 59.2
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 4.3e-06 55.8 45 57.8
Rhsim02G0032500 Rhododendron simsii HOM05D001048 ORTHO05D000069 5.7e-06 55.5 61 50.8
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 9.7e-06 54.7 63 46.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 9.7e-06 54.7 63 46.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 9.7e-06 54.7 63 46.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 9.7e-06 54.7 63 46.0


User provided reference genes

Program Settings