Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.5e-89 332.8 166 100.0
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.5e-25 120.2 101 67.3
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 6.1e-22 108.2 116 55.2
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 1.8e-21 106.7 116 47.4
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.3e-21 106.3 126 49.2
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.3e-21 106.3 124 50.0
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 5.1e-21 105.1 98 58.2
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 6.7e-21 104.8 126 48.4
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 9.7e-20 100.9 126 46.8
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 1.3e-19 100.5 116 44.8
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 1.3e-19 100.5 125 44.8
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.3e-19 100.5 114 49.1
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 2.8e-19 99.4 125 47.2
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 3.7e-19 99.0 116 45.7
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 4.8e-19 98.6 119 47.9
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.4e-18 97.1 127 42.5
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 1.8e-18 96.7 124 39.5
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 2.4e-18 96.3 114 48.2
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 4.1e-18 95.5 123 43.1
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 4.1e-18 95.5 121 43.0
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 4.1e-18 95.5 116 46.6
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 5.3e-18 95.1 117 44.4
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 9.0e-18 94.4 124 45.2
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.2e-17 94.0 123 43.1
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.2e-17 94.0 111 49.5
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 1.2e-17 94.0 109 41.3
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 2.6e-17 92.8 127 40.9
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 2.6e-17 92.8 117 43.6
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.6e-17 92.8 117 43.6
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 2.6e-17 92.8 111 45.0
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 2.6e-17 92.8 124 41.9
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 3.4e-17 92.4 138 42.0
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 3.4e-17 92.4 117 43.6
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 3.4e-17 92.4 118 40.7
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 3.4e-17 92.4 123 43.1
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 4.5e-17 92.0 101 46.5
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 4.5e-17 92.0 121 40.5
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 5.9e-17 91.7 118 41.5
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 5.9e-17 91.7 126 40.5
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 5.9e-17 91.7 110 44.5
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 1.0e-16 90.9 114 43.0
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.3e-16 90.5 139 38.8
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 1.3e-16 90.5 103 49.5
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 1.7e-16 90.1 117 46.2
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 1.7e-16 90.1 127 43.3
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 1.7e-16 90.1 100 48.0
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 1.7e-16 90.1 117 46.2
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 2.2e-16 89.7 123 42.3
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 2.9e-16 89.4 120 43.3
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.8e-16 89.0 101 48.5
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 3.8e-16 89.0 109 41.3
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 3.8e-16 89.0 111 46.8
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 3.8e-16 89.0 124 44.4
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 5.0e-16 88.6 124 43.5
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 6.5e-16 88.2 118 44.9
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 8.5e-16 87.8 105 45.7
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 8.5e-16 87.8 93 48.4
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 1.1e-15 87.4 127 37.8
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 1.1e-15 87.4 126 40.5
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 1.4e-15 87.0 99 51.5
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.4e-15 87.0 107 44.9
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 1.4e-15 87.0 92 50.0
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 1.4e-15 87.0 107 46.7
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 1.4e-15 87.0 130 40.8
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.9e-15 86.7 126 38.9
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.9e-15 86.7 124 41.9
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 1.9e-15 86.7 106 45.3
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.9e-15 86.7 125 41.6
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 1.9e-15 86.7 96 47.9
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 2.5e-15 86.3 121 42.1
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 2.5e-15 86.3 109 48.6
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 4.2e-15 85.5 98 45.9
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 4.2e-15 85.5 110 42.7
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 4.2e-15 85.5 128 42.2
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 4.2e-15 85.5 93 46.2
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 5.5e-15 85.1 129 39.5
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.5e-15 85.1 129 39.5
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 5.5e-15 85.1 140 38.6
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.6e-14 83.6 121 41.3
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 1.6e-14 83.6 103 47.6
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 2.1e-14 83.2 140 37.9
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 2.1e-14 83.2 105 41.9
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 3.6e-14 82.4 117 39.3
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 3.6e-14 82.4 106 40.6
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.6e-14 82.4 110 41.8
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 4.6e-14 82.0 111 41.4
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 4.6e-14 82.0 124 41.1
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.6e-14 82.0 116 40.5
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 4.6e-14 82.0 126 38.1
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 6.1e-14 81.6 124 41.1
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 6.1e-14 81.6 129 38.8
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 7.9e-14 81.3 110 41.8
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 7.9e-14 81.3 86 46.5
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 1.0e-13 80.9 105 44.8
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 1.4e-13 80.5 101 45.5
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 1.4e-13 80.5 126 40.5
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 1.4e-13 80.5 124 38.7
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 1.4e-13 80.5 125 39.2
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 1.8e-13 80.1 127 41.7
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 1.8e-13 80.1 125 39.2
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 1.8e-13 80.1 119 39.5
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.8e-13 80.1 116 44.0
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.8e-13 80.1 125 39.2
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.8e-13 80.1 116 41.4
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 1.8e-13 80.1 127 40.9
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 2.3e-13 79.7 112 41.1
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 2.3e-13 79.7 119 42.0
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 3.0e-13 79.3 126 40.5
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 3.9e-13 79.0 127 41.7
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 5.1e-13 78.6 127 41.7
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 5.1e-13 78.6 102 43.1
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 5.1e-13 78.6 110 43.6
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 6.7e-13 78.2 112 44.6
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 6.7e-13 78.2 112 43.8
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 6.7e-13 78.2 112 43.8
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 8.8e-13 77.8 102 45.1
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 8.8e-13 77.8 119 40.3
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 1.1e-12 77.4 103 46.6
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.1e-12 77.4 133 38.3
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 1.5e-12 77.0 92 45.7
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 2.0e-12 76.6 126 39.7
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 2.0e-12 76.6 126 39.7
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 2.0e-12 76.6 95 44.2
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 2.5e-12 76.3 119 39.5
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 2.5e-12 76.3 119 39.5
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 2.5e-12 76.3 96 46.9
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 2.5e-12 76.3 95 42.1
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 3.3e-12 75.9 123 37.4
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 4.3e-12 75.5 118 36.4
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 4.3e-12 75.5 107 43.9
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 4.3e-12 75.5 112 42.9
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 4.3e-12 75.5 131 36.6
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 4.3e-12 75.5 93 43.0
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.7e-12 75.1 109 44.0
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 7.4e-12 74.7 105 42.9
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 7.4e-12 74.7 127 40.2
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 7.4e-12 74.7 98 46.9
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 7.4e-12 74.7 127 40.2
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 7.4e-12 74.7 94 47.9
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.7e-11 73.6 109 43.1
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 2.8e-11 72.8 105 40.0
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 4.8e-11 72.0 97 43.3
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 6.3e-11 71.6 88 50.0
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.4e-10 70.5 124 31.5
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 1.4e-10 70.5 146 33.6
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 1.8e-10 70.1 97 42.3
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 4.1e-10 68.9 106 40.6
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 4.1e-10 68.9 99 41.4
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 6.9e-10 68.2 95 40.0
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 9.1e-10 67.8 112 40.2
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 2.0e-09 66.6 112 38.4
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 3.4e-09 65.9 91 45.1
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 3.4e-09 65.9 93 41.9
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 5.9e-09 65.1 120 36.7
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 7.7e-09 64.7 125 34.4
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.3e-08 63.9 89 41.6
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 1.7e-08 63.5 99 41.4
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 5.0e-08 62.0 123 34.1
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 5.0e-08 62.0 97 40.2
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 6.5e-08 61.6 122 32.8
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.5e-07 59.7 89 38.2
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 2.5e-07 59.7 106 34.0
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 3.6e-06 55.8 88 38.6
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 4.7e-06 55.5 88 38.6


User provided reference genes

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