Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0031700 Rhododendron simsii HOM05D001718 ORTHO05D001994 6.9e-110 400.6 194 100.0
RhsimUnG0054400 Rhododendron simsii HOM05D001718 ORTHO05D001994 1.0e-44 184.1 161 68.3
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 3.0e-28 129.4 107 66.4
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 3.9e-28 129.0 82 79.3
Rhsim10G0031900 Rhododendron simsii HOM05D001999 ORTHO05D001994 4.3e-19 99.0 71 76.1
CSS0032431 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.3e-12 76.6 88 53.4
Lj1A26T29 Lonicera japonica HOM05D001999 ORTHO05D001994 5.8e-08 62.0 119 41.2
Ca_10140_v3 Cicer arietinum L. HOM05D001718 ORTHO05D007949 7.6e-08 61.6 41 73.2
Rhsim03G0012100 Rhododendron simsii HOM05D001718 ORTHO05D007949 7.6e-08 61.6 41 73.2
vmacro07869 Vaccinium macrocarpon HOM05D001718 ORTHO05D007949 7.6e-08 61.6 41 73.2
MBI01_g27617_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D007949 1.7e-07 60.5 41 70.7
TAR633G2084 Trochodendron aralioides HOM05D001718 ORTHO05D007949 1.7e-07 60.5 41 70.7
GSVIVG01033332001 Vitis vinifera HOM05D001718 ORTHO05D007949 1.7e-07 60.5 41 70.7
CSS0042564 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D007949 2.2e-07 60.1 41 73.2
DCAR_013578 Daucus carota HOM05D001718 ORTHO05D007949 2.2e-07 60.1 41 70.7
Lj2A378G22 Lonicera japonica HOM05D001718 ORTHO05D007949 2.2e-07 60.1 41 73.2
Actinidia09361 Actinidia chinensis HOM05D001718 ORTHO05D007949 2.9e-07 59.7 41 70.7
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 2.9e-07 59.7 41 70.7
FvH4_6g23140 Fragaria vesca HOM05D001718 ORTHO05D007949 3.8e-07 59.3 41 70.7
FAN14G2301 Fragaria x ananassa HOM05D001718 ORTHO05D007949 3.8e-07 59.3 41 70.7
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 3.8e-07 59.3 41 70.7
Nn2g15432 Nelumbo nucifera HOM05D001718 ORTHO05D007949 3.8e-07 59.3 41 68.3
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 3.8e-07 59.3 41 70.7
EL10Ac3g07007 Beta vulgaris HOM05D001718 ORTHO05D007949 4.9e-07 58.9 41 68.3
FAN02G1268 Fragaria x ananassa HOM05D001718 ORTHO05D007949 6.4e-07 58.5 41 70.7
Prupe.7G068000 Prunus persica HOM05D001718 ORTHO05D007949 6.4e-07 58.5 41 70.7
RcHm_v2.0_Chr3g0480991 Rosa chinensis HOM05D001718 ORTHO05D007949 6.4e-07 58.5 41 70.7
Sc13g0001990 Simmondsia chinensis HOM05D001718 ORTHO05D007949 6.4e-07 58.5 41 68.3
Cfa016868 Carpinus fangiana HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 73.2
Haze_19914 Corylus avellana HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 73.2
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 68.3
PSO384G3132 Papaver somniferum HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 73.2
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 68.3
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 8.4e-07 58.2 41 68.3
Atru.chr1.1027 Acer truncatum HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 70.7
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 68.3
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 68.3
CiPaw.09G034600 Carya illinoinensis HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 70.7
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 68.3
Lj5g0011485 Lotus japonicus HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 65.9
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 68.3
Thecc.05G163200 Theobroma cacao HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 70.7
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 1.1e-06 57.8 41 68.3
Cpa.g.sc85.132 Carica papaya HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
COL.COLO4_28683 Corchorus olitorius HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 68.3
SalBow6G4514 Salvia bowleyana HOM05D001718 ORTHO05D007949 1.4e-06 57.4 41 65.9
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 1.9e-06 57.0 41 68.3
AUR62025984 Chenopodium quinoa HOM05D001718 ORTHO05D007949 1.9e-06 57.0 41 68.3
Glyma.10G094900 Glycine max HOM05D001718 ORTHO05D007949 1.9e-06 57.0 41 65.9
ATR0605G274 Amborella trichopoda HOM05D001718 ORTHO05D007949 2.4e-06 56.6 41 65.9
Aqoxy1G00219 Aquilegia oxysepala HOM05D001718 ORTHO05D007949 2.4e-06 56.6 41 68.3
Ciclev10004757m.g Citrus clementina HOM05D001718 ORTHO05D007949 2.4e-06 56.6 41 68.3
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 2.4e-06 56.6 41 65.9
Eucgr.A02402 Eucalyptus grandis HOM05D001718 ORTHO05D007949 3.2e-06 56.2 41 68.3
Zm00001eb381590 Zea mays HOM05D001718 ORTHO05D007949 3.2e-06 56.2 41 68.3
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 4.2e-06 55.8 41 65.9
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 4.2e-06 55.8 41 65.9
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 4.2e-06 55.8 41 65.9
SEGI_38104 Sequoiadendron giganteum HOM05D001718 ORTHO05D007949 4.2e-06 55.8 41 65.9
Actinidia24344 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.1e-06 55.1 83 44.6
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 63.4
CAN.G115.8 Capsicum annuum HOM05D001718 ORTHO05D007949 7.1e-06 55.1 46 58.7
ClCG04G000670 Citrullus lanatus HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 63.4
MELO3C009027.2 Cucumis melo HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 63.4
CsaV3_4G031400 Cucumis sativus L. HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 63.4
MD12G1066100 Malus domestica HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 68.3
Sed0001386 Sechium edule HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 63.4
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 7.1e-06 55.1 41 65.9
TWI74G0848 Tripterygium wilfordii HOM05D001718 ORTHO05D007949 9.3e-06 54.7 41 65.9


User provided reference genes

Program Settings