Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.0e-182 643.3 328 100.0
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 3.1e-155 552.0 320 87.2
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 2.1e-143 512.7 328 80.5
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.9e-137 492.3 334 78.4
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.8e-137 491.9 345 76.2
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 8.0e-135 484.2 322 78.6
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 4.6e-130 468.4 326 75.5
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 3.0e-129 465.7 325 75.7
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 4.3e-128 461.8 328 73.8
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 2.2e-124 449.5 325 72.6
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 5.4e-123 444.9 266 82.0
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 4.6e-122 441.8 325 70.8
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 6.0e-122 441.4 325 71.1
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 6.0e-122 441.4 325 71.1
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.1e-120 437.2 321 70.7
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.5e-120 436.8 325 70.8
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 4.7e-119 431.8 326 69.9
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 6.2e-119 431.4 323 68.7
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.8e-118 429.9 328 69.2
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.8e-118 429.9 330 68.5
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.5e-117 426.8 325 72.0
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 2.0e-117 426.4 323 69.7
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 2.2e-116 422.9 321 69.2
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 2.2e-116 422.9 317 71.6
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 3.7e-116 422.2 291 73.5
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 6.4e-116 421.4 336 68.2
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 4.1e-115 418.7 320 69.7
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 5.4e-115 418.3 319 69.3
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.1e-114 416.4 312 67.6
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 6.0e-114 414.8 315 68.3
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.0e-113 414.1 328 69.2
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 2.3e-113 412.9 324 67.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 3.9e-113 412.1 328 68.9
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 3.9e-113 412.1 326 68.7
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 6.6e-113 411.4 323 68.7
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.1e-112 410.6 316 69.3
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.1e-112 410.6 336 66.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.6e-112 408.3 328 68.3
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.6e-111 406.8 328 68.0
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.8e-111 406.0 332 67.5
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.8e-111 406.0 332 67.5
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 2.8e-111 406.0 332 67.5
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 6.2e-111 404.8 360 63.3
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 6.2e-111 404.8 320 70.3
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 3.1e-110 402.5 311 68.8
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 2.6e-109 399.4 309 67.0
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 5.8e-109 398.3 292 72.6
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 5.8e-109 398.3 293 72.0
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 8.4e-108 394.4 321 68.8
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 8.4e-108 394.4 255 76.5
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.4e-107 393.7 274 71.5
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 3.2e-107 392.5 319 67.1
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 4.1e-107 392.1 320 66.2
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 7.1e-107 391.3 328 68.9
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.6e-106 390.2 322 68.6
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.1e-106 389.8 275 72.0
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 6.6e-105 384.8 253 75.5
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 6.6e-105 384.8 316 66.8
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 4.3e-104 382.1 275 70.2
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 5.6e-104 381.7 324 63.0
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 7.3e-104 381.3 321 66.7
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 1.2e-103 380.6 315 66.0
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 1.2e-103 380.6 320 66.6
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 2.1e-103 379.8 312 67.6
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 4.7e-103 378.6 312 65.1
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 6.2e-103 378.3 232 80.6
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 1.1e-102 377.5 324 66.0
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.1e-102 375.9 346 62.7
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 6.8e-102 374.8 291 68.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 8.4e-100 367.9 314 65.0
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.4e-99 367.1 330 61.8
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 3.2e-99 365.9 310 63.9
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.1e-98 363.2 323 62.2
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 2.7e-98 362.8 293 68.9
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 3.0e-97 359.4 271 69.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 6.6e-97 358.2 290 66.9
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 8.7e-97 357.8 304 65.5
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 2.5e-96 356.3 316 62.7
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 3.3e-96 355.9 311 62.1
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.3e-96 355.5 229 78.6
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 9.6e-96 354.4 322 58.7
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.6e-95 353.6 318 61.6
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 2.1e-95 353.2 311 63.0
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.6e-95 352.4 316 63.0
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.8e-94 350.1 316 62.7
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 1.2e-93 347.4 275 70.2
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 1.5e-93 347.1 316 61.7
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 1.5e-93 347.1 316 61.7
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.4e-93 345.9 221 79.6
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.7e-92 343.6 281 63.7
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 2.2e-92 343.2 279 66.7
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.7e-89 333.6 197 82.7
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 3.3e-88 329.3 315 57.5
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.6e-82 310.5 238 71.0
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 6.0e-82 308.5 176 85.8
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.9e-80 303.5 176 82.4
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 2.1e-79 300.1 313 54.6
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 5.8e-77 292.0 223 67.7
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 6.5e-76 288.5 262 59.9
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.6e-74 283.9 239 64.4
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-73 280.8 179 79.9
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 1.3e-63 247.7 200 60.0
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 2.8e-63 246.5 197 62.9
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 6.3e-63 245.4 234 59.8
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 8.2e-63 245.0 235 56.2
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 3.8e-60 236.1 238 58.8
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 8.2e-55 218.4 209 55.0
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 3.3e-48 196.4 279 43.0
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.2e-42 177.9 244 47.1
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 4.8e-39 166.0 125 64.8
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 2.4e-38 163.7 208 42.8
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 2.7e-37 160.2 221 40.7
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 6.8e-33 145.6 92 75.0
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 7.7e-29 132.1 96 70.8
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 8.5e-28 128.6 86 75.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 7.2e-27 125.6 120 50.0
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 1.7e-23 114.4 60 90.0
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.1e-22 111.7 195 42.6
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 1.6e-13 81.3 147 37.4
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 6.8e-09 65.9 120 43.3
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.5e-08 64.7 36 80.6


User provided reference genes

Program Settings