Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.4e-158 561.6 282 100.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.5e-142 509.6 288 88.9
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.2e-133 479.2 348 75.6
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.7e-123 445.7 364 66.8
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 5.1e-114 414.8 364 61.0
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-110 403.7 352 63.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 2.2e-109 399.4 361 58.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.9e-108 396.4 364 58.5
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.5e-108 396.0 367 59.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.5e-108 396.0 364 57.7
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 4.7e-107 391.7 364 58.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 4.7e-107 391.7 340 62.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.0e-106 390.6 354 60.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.0e-106 390.6 372 55.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.8e-106 389.8 342 62.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-106 389.4 362 57.5
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-106 389.0 362 57.5
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.9e-106 388.7 372 56.2
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 5.1e-106 388.3 364 59.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.6e-105 386.0 364 57.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 4.4e-105 385.2 364 58.0
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 5.7e-105 384.8 361 56.5
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 5.7e-105 384.8 361 57.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 7.4e-105 384.4 363 57.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 9.7e-105 384.0 419 52.0
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.3e-104 383.6 358 58.9
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.3e-104 383.6 376 55.9
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-104 382.5 362 56.6
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.8e-104 381.7 364 55.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.3e-104 381.3 363 56.7
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.3e-103 378.3 364 55.5
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.2e-102 377.1 364 54.4
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.2e-102 377.1 364 55.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-102 377.1 364 56.3
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 5.9e-102 374.8 361 56.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 7.7e-102 374.4 345 58.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 7.7e-102 374.4 345 58.0
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.7e-101 373.2 298 69.1
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.9e-101 372.5 363 56.2
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 5.0e-101 371.7 369 54.2
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 5.0e-101 371.7 362 55.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 5.0e-101 371.7 357 55.2
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 8.5e-101 370.9 364 55.8
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.9e-100 369.8 372 53.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.9e-100 369.8 362 55.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.5e-100 369.4 362 55.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.2e-100 368.6 343 57.7
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 4.2e-100 368.6 362 54.7
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 5.5e-100 368.2 362 55.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.5e-100 368.2 396 51.8
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 9.4e-100 367.5 362 54.7
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.4e-100 367.5 354 55.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-99 366.7 363 55.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 8.0e-99 364.4 361 54.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-98 362.8 379 53.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.3e-98 362.8 391 51.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 5.2e-98 361.7 365 53.7
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 6.7e-98 361.3 352 56.2
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 6.7e-98 361.3 352 56.2
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.1e-97 360.5 362 55.5
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.6e-97 359.4 362 54.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.4e-97 357.8 393 51.7
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 9.7e-97 357.5 366 53.6
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.7e-96 356.7 363 54.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-96 356.3 389 50.9
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.7e-96 355.5 389 50.9
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.8e-96 355.1 358 53.6
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.3e-96 354.8 389 50.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 8.2e-96 354.4 322 61.5
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 8.2e-96 354.4 365 53.7
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 4.1e-95 352.1 363 52.9
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.6e-94 349.4 335 56.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.2e-93 346.3 349 55.3
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 5.5e-92 341.7 349 54.7
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 7.2e-92 341.3 362 51.7
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 7.2e-92 341.3 363 51.5
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.1e-91 339.7 349 54.7
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.7e-91 339.3 363 51.5
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.7e-91 339.3 363 51.2
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 2.7e-91 339.3 360 49.2
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.7e-91 338.6 363 51.0
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.0e-90 335.9 350 55.7
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.0e-90 335.9 363 51.0
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.0e-90 335.5 363 51.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.0e-90 335.5 363 50.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 4.0e-90 335.5 363 51.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.0e-90 335.5 363 51.2
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 5.2e-90 335.1 363 51.0
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 4.4e-89 332.0 363 50.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.5e-86 322.0 346 51.4
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.7e-86 321.2 355 48.7
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.9e-85 319.3 375 48.3
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.2e-84 315.5 221 73.8
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-83 313.9 219 73.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.1e-83 313.2 363 47.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.1e-83 313.2 221 71.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 8.0e-83 311.2 318 53.8
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.4e-82 310.5 221 71.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-82 310.5 354 50.0
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.0e-82 308.9 222 70.3
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 5.2e-82 308.5 366 48.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.8e-82 307.8 221 70.1
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.2e-81 307.4 221 73.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.2e-80 303.1 221 69.2
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.4e-79 299.7 322 51.9
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 9.1e-79 297.7 221 68.8
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.0e-77 294.3 355 46.2
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.3e-77 293.9 221 65.6
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.5e-76 287.7 221 66.1
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 3.6e-75 285.8 358 45.8
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.7e-72 275.8 280 52.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.9e-69 266.2 221 63.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.1e-68 264.2 358 46.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.9e-64 248.8 221 61.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.3e-61 240.0 345 40.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.9e-60 236.9 285 44.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 8.1e-59 231.5 286 49.7
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 3.2e-55 219.5 362 37.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.1e-52 211.1 336 36.3
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.9e-52 210.3 348 39.4
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.8e-50 203.8 339 37.8
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.9e-48 195.7 319 36.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 7.3e-44 181.8 299 41.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 8.1e-35 151.8 128 63.3
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.9e-34 148.7 90 84.4
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 6.0e-30 135.6 114 59.6
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.1e-28 131.3 327 29.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.4e-26 124.4 103 63.1
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-26 124.0 146 47.9
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-26 121.7 87 71.3
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-24 117.1 87 67.8
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-24 115.9 85 68.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-23 114.8 78 73.1
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-23 114.8 78 73.1
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 3.2e-23 113.2 168 42.3
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-23 112.8 85 65.9
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-23 112.8 78 71.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-23 112.8 78 71.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-23 111.7 78 71.8
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-22 110.9 78 70.5
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.5e-22 109.8 78 70.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 3.5e-22 109.8 102 54.9
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-20 104.4 78 66.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.3e-20 102.8 69 72.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.3e-19 101.3 63 69.8
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.6e-19 100.9 62 72.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.6e-19 100.9 374 24.9
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.8e-19 100.1 102 53.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.2e-19 99.0 78 62.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-15 88.2 77 55.8
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-15 86.7 56 75.0
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 4.2e-15 86.3 60 68.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-14 84.7 101 50.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.6e-14 82.8 75 54.7
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.0e-14 82.4 67 65.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 6.7e-13 79.0 45 80.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.7e-12 75.9 66 56.1
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.6e-11 74.3 335 22.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 9.0e-10 68.6 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-09 67.8 43 74.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.5e-09 66.2 323 22.6
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.9e-09 65.9 45 71.1
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 2.9e-08 63.5 43 67.4
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 4.2e-07 59.7 42 64.3
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.2e-06 58.2 46 60.9


User provided reference genes

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