Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0025100 Rhododendron simsii HOM05D016670 ORTHO05D000285 8.9e-137 490.3 262 100.0
Rhsim12G0127300 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.5e-51 207.2 272 46.7
Rhsim03G0199100 Rhododendron simsii HOM05D016670 ORTHO05D000285 5.4e-49 198.7 140 84.3
Rhsim02G0123200 Rhododendron simsii HOM05D016670 ORTHO05D000285 5.8e-43 178.7 206 50.0
Rhsim04G0151200 Rhododendron simsii HOM05D016670 ORTHO05D000285 8.0e-37 158.3 113 73.5
vmacro21219 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 5.4e-25 119.0 275 33.1
Rhsim02G0172700 Rhododendron simsii HOM05D016670 ORTHO05D000285 5.1e-23 112.5 113 56.6
vmacro10666 Vaccinium macrocarpon HOM05D010762 ORTHO05D000285 1.8e-20 104.0 221 31.2
Rhsim03G0202100 Rhododendron simsii HOM05D016670 ORTHO05D000285 5.2e-20 102.4 63 81.0
Rhsim03G0199200 Rhododendron simsii HOM05D016670 ORTHO05D000285 6.8e-20 102.1 53 92.5
vmacro10668 Vaccinium macrocarpon HOM05D016670 ORTHO05D000285 4.4e-19 99.4 221 30.8
vmacro21342 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 2.9e-18 96.7 267 33.0
Rhsim10G0163900 Rhododendron simsii HOM05D000034 ORTHO05D000285 5.1e-15 85.9 140 35.0
Rhsim04G0145400 Rhododendron simsii HOM05D000034 ORTHO05D000285 1.1e-14 84.7 140 35.0
RhsimUnG0152200 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.9e-14 84.0 140 35.0
Rhsim09G0200000 Rhododendron simsii HOM05D000034 ORTHO05D000037 3.3e-14 83.2 140 35.0
vmacro09328 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 5.6e-14 82.4 175 33.1
Rhsim02G0037900 Rhododendron simsii HOM05D000034 ORTHO05D000285 2.1e-13 80.5 191 31.4
Rhsim01G0089100 Rhododendron simsii HOM05D000034 ORTHO05D000285 5.3e-12 75.9 140 33.6
Rhsim03G0048400 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.3e-12 75.9 140 33.6
Rhsim09G0055100 Rhododendron simsii HOM05D000034 ORTHO05D000037 6.9e-12 75.5 142 34.5
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 3.4e-11 73.2 157 29.3
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 5.8e-11 72.4 161 28.6
Rhsim05G0142100 Rhododendron simsii HOM05D000034 ORTHO05D000285 5.8e-11 72.4 147 30.6
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 2.9e-10 70.1 144 28.5
TWI75G0526 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.9e-10 69.3 143 27.3
FAN04G1353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.4e-10 68.9 143 28.7
TWI63G0199 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 8.4e-10 68.6 119 31.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.1e-09 68.2 168 26.8
TWI75G1494 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.1e-09 68.2 142 26.1
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.4e-09 67.8 158 28.5
TWI23G0996 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.4e-09 67.8 142 26.1
TWI34G1578 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.4e-09 67.8 142 26.1
Rhsim08G0093200 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.9e-09 67.4 239 25.9
TWI36G1398 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.9e-09 67.4 143 28.0
TWI38G1581 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.9e-09 67.4 142 26.8
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 3.2e-09 66.6 145 27.6
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 3.2e-09 66.6 128 29.7
TWI56G0680 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.2e-09 66.6 241 24.5
FvH4_4g20923 Fragaria vesca HOM05D000876 ORTHO05D000285 4.2e-09 66.2 140 27.9
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 4.2e-09 66.2 140 27.9
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 5.4e-09 65.9 157 28.0
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.3e-09 65.1 118 30.5
Medtr8g054100 Medicago truncatula HOM05D000876 ORTHO05D000285 9.3e-09 65.1 142 27.5
Rhsim05G0084200 Rhododendron simsii HOM05D000034 ORTHO05D000285 9.3e-09 65.1 129 31.8
TWI81G0918 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 9.3e-09 65.1 141 24.8
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 1.2e-08 64.7 196 26.5
TWI75G0795 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.2e-08 64.7 143 25.9
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 2.1e-08 63.9 144 25.7
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 2.1e-08 63.9 144 25.7
Potri.006G116400 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.1e-08 63.9 169 26.6
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 2.1e-08 63.9 141 28.4
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.7e-08 63.5 138 25.4
CiPaw.08G099200 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.7e-08 63.5 132 28.0
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.7e-08 63.5 143 28.0
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.7e-08 63.5 144 31.2
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 3.5e-08 63.2 146 27.4
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.5e-08 63.2 143 27.3
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.5e-08 63.2 141 31.9
Medtr1g016370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.5e-08 63.2 142 26.8
Medtr5g055390 Medicago truncatula HOM05D000876 ORTHO05D000285 3.5e-08 63.2 115 29.6
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 3.5e-08 63.2 151 25.2
FAN14G5115 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.6e-08 62.8 143 27.3
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.6e-08 62.8 137 27.0
FAN21G2291 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.6e-08 62.8 141 27.0
Gorai.012G085300 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.6e-08 62.8 144 32.6
Phvul.001G240000 Phaseolus vulgaris HOM05D000665 ORTHO05D000285 4.6e-08 62.8 122 28.7
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.0e-08 62.4 144 29.9
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-07 61.6 144 27.1
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 1.0e-07 61.6 145 24.8
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-07 61.6 145 24.8
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-07 61.6 144 31.2
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 1.3e-07 61.2 133 27.1
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.3e-07 61.2 151 27.8
FAN12G1859 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-07 61.2 130 27.7
TWI31G1090 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.3e-07 61.2 190 22.1
TWI34G1784 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.7e-07 60.8 206 21.8
TWI38G0708 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.7e-07 60.8 206 21.8
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 2.3e-07 60.5 186 23.1
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.3e-07 60.5 141 31.2
Gorai.013G184300 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.3e-07 60.5 135 29.6
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 2.3e-07 60.5 142 25.4
Medtr4g043620 Medicago truncatula HOM05D009922 ORTHO05D000285 2.3e-07 60.5 162 24.1
TWI38G1661 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.3e-07 60.5 206 22.3
arahy.Tifrunner.gnm1.ann1.1GV9MA Arachis hypogaea HOM05D000451 ORTHO05D000351 3.0e-07 60.1 138 27.5
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 3.9e-07 59.7 196 22.4
Lj1g0012065 Lotus japonicus HOM05D000876 ORTHO05D000285 3.9e-07 59.7 147 23.8
arahy.Tifrunner.gnm1.ann1.9S6AA1 Arachis hypogaea HOM05D000451 ORTHO05D000351 5.1e-07 59.3 138 27.5
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.1e-07 59.3 228 26.8
CSS0024057 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.1e-07 59.3 228 26.8
FAN03G1971 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.1e-07 59.3 122 28.7
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.1e-07 59.3 144 31.2
arahy.Tifrunner.gnm1.ann1.4ILM2X Arachis hypogaea HOM05D000876 ORTHO05D000285 6.6e-07 58.9 88 33.0
FAN09G0655 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.6e-07 58.9 136 27.2
Gorai.012G070700 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.6e-07 58.9 136 30.1
Psat0s2829g0240 Pisum sativum HOM05D011477 ORTHO05D000285 6.6e-07 58.9 166 27.1
VMungo1383G2642 Vigna mungo HOM05D000665 ORTHO05D000285 6.6e-07 58.9 122 27.9
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 8.7e-07 58.5 142 26.1
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 8.7e-07 58.5 146 25.3
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 8.7e-07 58.5 204 24.0
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.7e-07 58.5 145 24.1
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 8.7e-07 58.5 163 28.8
TPR.G33899 Trifolium pratense HOM05D000876 ORTHO05D000285 8.7e-07 58.5 144 25.0
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-06 58.2 144 27.8
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-06 58.2 144 27.8
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-06 58.2 198 22.7
Gorai.003G031500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-06 58.2 134 32.1
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-06 58.2 143 28.7
FAN03G0686 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-06 57.8 166 26.5
Gorai.010G124300 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-06 57.8 133 28.6
Potri.004G127420 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.5e-06 57.8 171 24.6
Potri.007G118701 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.5e-06 57.8 162 25.3
Potri.014G061450 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.5e-06 57.8 147 27.2
RcHm_v2.0_Chr4g0406011 Rosa chinensis HOM05D000876 ORTHO05D000285 1.5e-06 57.8 68 33.8
vmacro19158 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 1.5e-06 57.8 92 35.9
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-06 57.4 143 23.8
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 1.9e-06 57.4 145 24.1
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 1.9e-06 57.4 122 27.0
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 1.9e-06 57.4 122 27.0
vmacro17790 Vaccinium macrocarpon HOM05D001332 ORTHO05D001894 1.9e-06 57.4 146 29.5
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.5e-06 57.0 146 24.7
FAN09G1076 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-06 57.0 141 23.4
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.5e-06 57.0 129 27.9
Glyma.18G030600 Glycine max HOM05D000665 ORTHO05D000285 2.5e-06 57.0 122 24.6
Medtr8g069895 Medicago truncatula HOM05D009922 ORTHO05D000285 2.5e-06 57.0 162 21.6
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 2.5e-06 57.0 124 24.2
TWI53G2118 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.5e-06 57.0 132 25.8
Duzib177G0996 Durio zibethinus HOM05D000876 ORTHO05D000285 3.3e-06 56.6 150 26.7
Glyma.11G226600 Glycine max HOM05D000665 ORTHO05D000285 3.3e-06 56.6 122 25.4
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 3.3e-06 56.6 138 30.4
Gorai.007G119700 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-06 56.6 143 27.3
Gorai.009G029000 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-06 56.6 83 38.6
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 3.3e-06 56.6 143 27.3
Atru.chr12.253 Acer truncatum HOM05D000876 ORTHO05D000285 4.3e-06 56.2 124 22.6
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 4.3e-06 56.2 200 21.0
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 4.3e-06 56.2 200 21.0
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.3e-06 56.2 144 29.2
Gorai.009G359600 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.3e-06 56.2 137 32.1
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 4.3e-06 56.2 186 23.7
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 4.3e-06 56.2 186 23.7
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 4.3e-06 56.2 186 23.7
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.3e-06 56.2 126 26.2
Thecc.05G288300 Theobroma cacao HOM05D000876 ORTHO05D000285 4.3e-06 56.2 144 24.3
TPR.G10520 Trifolium pratense HOM05D000665 ORTHO05D003147 4.3e-06 56.2 66 36.4
TWI12G1481 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.3e-06 56.2 206 21.8
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 5.6e-06 55.8 125 24.8
Gorai.007G232100 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.6e-06 55.8 224 26.3
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 5.6e-06 55.8 157 26.8
Medtr3g070080 Medicago truncatula HOM05D000665 ORTHO05D000285 5.6e-06 55.8 76 30.3
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 5.6e-06 55.8 163 28.2
QL07p023043 Quercus lobata HOM05D003171 ORTHO05D000921 5.6e-06 55.8 119 26.9
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 5.6e-06 55.8 165 29.7
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 7.3e-06 55.5 143 23.8
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.3e-06 55.5 143 25.9
Gorai.004G036300 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.3e-06 55.5 227 23.3
Gorai.007G258900 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.3e-06 55.5 112 33.0
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 7.3e-06 55.5 218 24.8
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 7.3e-06 55.5 218 24.8
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 7.3e-06 55.5 218 24.8
Potri.008G074066 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.3e-06 55.5 154 23.4
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 7.3e-06 55.5 127 26.8
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 7.3e-06 55.5 163 28.2
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 9.6e-06 55.1 151 23.8
CSS0005143 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 9.6e-06 55.1 188 26.1
CSS0015075 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 9.6e-06 55.1 231 25.1
Gorai.004G173400 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.6e-06 55.1 135 28.1
Nn1g09099 Nelumbo nucifera HOM05D000034 ORTHO05D000285 9.6e-06 55.1 95 32.6


User provided reference genes

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