Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.8e-84 315.8 157 100.0
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.0e-42 177.2 200 57.0
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 1.5e-25 120.2 157 49.7
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 3.7e-21 105.5 157 44.6
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 8.3e-21 104.4 157 44.6
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 5.4e-20 101.7 158 43.7
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 7.0e-20 101.3 157 43.9
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 1.6e-19 100.1 157 42.7
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 1.6e-19 100.1 154 44.8
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 2.0e-19 99.8 157 42.7
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 3.5e-19 99.0 154 42.9
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 1.0e-18 97.4 157 42.0
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.7e-18 96.7 151 43.7
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 1.7e-18 96.7 154 42.9
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 1.7e-18 96.7 154 42.2
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 1.7e-18 96.7 154 42.9
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 2.3e-18 96.3 151 41.7
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 41.6
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 3.8e-18 95.5 154 40.9
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 3.8e-18 95.5 152 42.1
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 8.6e-18 94.4 75 68.0
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 8.6e-18 94.4 154 41.6
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 8.6e-18 94.4 154 40.9
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 1.5e-17 93.6 153 39.9
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 1.5e-17 93.6 153 39.9
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.5e-17 93.6 154 40.9
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.5e-17 93.6 154 40.9
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 1.9e-17 93.2 154 40.9
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 2.5e-17 92.8 151 41.1
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 3.3e-17 92.4 58 84.5
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 4.2e-17 92.0 151 41.7
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 9.5e-17 90.9 56 83.9
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 1.6e-16 90.1 151 39.7
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 1.6e-16 90.1 58 81.0
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 2.8e-16 89.4 55 85.5
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 2.8e-16 89.4 55 85.5
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 3.6e-16 89.0 151 40.4
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 3.6e-16 89.0 150 40.0
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 3.6e-16 89.0 55 85.5
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 3.6e-16 89.0 55 85.5
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 3.6e-16 89.0 55 85.5
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 3.6e-16 89.0 152 39.5
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 4.7e-16 88.6 54 87.0
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 4.7e-16 88.6 55 85.5
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 4.7e-16 88.6 52 82.7
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 6.1e-16 88.2 55 85.5
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 6.1e-16 88.2 91 57.1
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 6.1e-16 88.2 55 83.6
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 6.1e-16 88.2 50 90.0
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 8.0e-16 87.8 50 90.0
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 1.0e-15 87.4 55 85.5
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 1.0e-15 87.4 50 88.0
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 1.0e-15 87.4 50 88.0
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 1.0e-15 87.4 54 85.2
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 1.4e-15 87.0 55 83.6
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 1.4e-15 87.0 49 89.8
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 1.4e-15 87.0 55 83.6
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 1.4e-15 87.0 154 38.3
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 1.4e-15 87.0 154 38.3
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 1.4e-15 87.0 52 80.8
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 1.4e-15 87.0 50 88.0
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 1.4e-15 87.0 55 83.6
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 1.4e-15 87.0 55 83.6
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 1.4e-15 87.0 50 90.0
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 1.8e-15 86.7 55 83.6
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 1.8e-15 86.7 55 83.6
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 1.8e-15 86.7 50 88.0
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 1.8e-15 86.7 50 86.0
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 1.8e-15 86.7 55 83.6
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 1.8e-15 86.7 50 88.0
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 1.8e-15 86.7 53 86.8
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 1.8e-15 86.7 55 83.6
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.8e-15 86.7 68 67.6
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.8e-15 86.7 68 67.6
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 2.3e-15 86.3 151 39.1
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 83.6
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 83.6
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 83.6
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 83.6
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 83.6
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 3.0e-15 85.9 55 81.8
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 4.0e-15 85.5 154 38.3
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 4.0e-15 85.5 51 82.4
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 4.0e-15 85.5 154 38.3
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 4.0e-15 85.5 55 83.6
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 4.0e-15 85.5 55 78.2
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 5.2e-15 85.1 55 78.2
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 6.8e-15 84.7 151 39.1
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 6.8e-15 84.7 50 88.0
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 6.8e-15 84.7 151 36.4
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 8.9e-15 84.3 50 88.0
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 1.5e-14 83.6 48 89.6
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 2.0e-14 83.2 55 76.4
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 2.0e-14 83.2 55 78.2
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.0e-14 83.2 55 76.4
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 2.6e-14 82.8 53 81.1
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 3.4e-14 82.4 55 78.2
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 9.8e-14 80.9 56 73.2
Sed0016611 Sechium edule HOM05D006711 ORTHO05D008104 2.4e-12 76.3 44 86.4
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 1.2e-11 73.9 143 37.8
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 2.7e-11 72.8 142 37.3
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 3.5e-11 72.4 139 37.4
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 4.5e-11 72.0 55 69.1
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 3.8e-10 68.9 54 68.5
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 1.1e-09 67.4 41 85.4
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 1.5e-09 67.0 138 35.5
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 2.1e-08 63.2 54 63.0
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 4.7e-08 62.0 61 57.4
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 4.7e-08 62.0 135 36.3
HPP92_016979 Vanilla planifolia HOM05D006711 ORTHO05D008104 6.1e-08 61.6 37 81.1
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 2.3e-07 59.7 81 45.7
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 3.0e-07 59.3 58 60.3
Dinv35040 Davidia involucrata HOM05D006711 ORTHO05D008104 8.9e-07 57.8 39 79.5
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 4.4e-06 55.5 66 56.1
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 9.8e-06 54.3 57 54.4


User provided reference genes

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