Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 4236.0 2128 100.0
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 3407.8 2096 85.3
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 3045.4 2318 71.2
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2839.7 2240 67.7
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2767.3 2159 67.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2500.7 2165 60.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2480.3 2169 60.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2444.8 2171 60.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2432.5 2170 59.2
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2371.7 2172 57.6
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2365.1 2169 58.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2363.6 2192 57.8
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2321.6 2180 56.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2314.3 2167 56.3
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2305.8 2168 56.5
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2283.1 2173 56.4
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2279.2 2166 55.1
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2271.5 2170 55.5
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2271.1 2173 55.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2269.2 2168 55.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2269.2 2157 55.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2268.4 2170 55.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2262.3 2158 55.6
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2261.5 2156 55.0
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2250.7 2160 54.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2246.5 2164 55.9
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2246.1 2169 54.5
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2242.2 2169 54.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2223.0 2169 54.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2221.4 2159 54.3
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2216.8 2052 56.7
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2215.3 2160 54.3
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2214.1 2176 54.0
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2204.5 2163 54.9
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2199.5 2145 54.3
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2196.8 2143 54.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2193.3 2159 54.0
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2192.5 2177 53.7
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2184.8 2167 53.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2176.0 2374 50.7
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2171.7 2153 54.5
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2163.7 2157 54.3
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2150.2 2199 53.3
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2139.0 2175 52.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2128.2 2152 53.3
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2122.4 2170 53.3
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2119.7 2017 55.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2119.4 2168 52.5
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2105.1 2467 47.3
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2103.6 2174 51.9
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2087.4 2164 52.3
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2087.4 2165 52.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2086.6 2164 51.2
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2068.5 2164 51.3
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2051.9 2155 52.4
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2042.3 2155 50.8
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2040.0 1608 64.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2038.5 2164 50.6
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2036.5 2172 50.6
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2034.2 2159 50.7
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2032.7 2164 50.5
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2029.2 2013 53.8
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2027.3 2163 50.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2026.5 2172 50.7
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2022.7 2164 50.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2016.5 2165 50.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2009.6 2191 49.8
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2008.4 2172 50.1
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2001.5 2192 49.7
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1992.2 2210 48.9
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1978.8 2181 50.2
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1976.8 2140 50.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1930.2 2159 50.1
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1905.6 2118 49.0
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1904.4 2175 49.0
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1820.1 2038 48.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1791.9 2182 45.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1625.1 1285 63.9
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1583.9 1188 67.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1427.5 1267 58.1
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1296.2 2034 38.0
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1228.0 1083 59.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1219.1 1639 43.3
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1203.0 2186 35.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1199.5 2058 37.3
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1155.2 1165 53.7
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1142.9 1005 58.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1116.7 2256 33.2
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.2e-281 973.8 2337 31.1
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.0e-267 926.8 784 59.4
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.2e-257 894.0 953 51.9
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.6e-246 855.5 1002 47.0
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 2.0e-242 844.3 1108 44.5
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.7e-233 814.7 1086 43.6
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.9e-233 813.1 977 46.2
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.8e-219 768.1 979 45.9
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 2.2e-169 601.7 497 61.8
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 4.4e-165 587.4 728 46.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 9.7e-165 586.3 859 43.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.7e-159 567.4 519 57.8
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.5e-157 562.4 534 52.4
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 4.7e-127 461.1 415 56.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 9.8e-125 453.4 292 73.6
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.5e-120 438.7 654 41.0
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.6e-114 417.9 634 40.2
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 4.1e-107 394.8 863 32.9
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.0e-97 363.6 1051 28.5
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.1e-95 355.9 216 79.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.3e-94 351.3 254 63.4
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.3e-92 346.7 371 52.8
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 8.4e-92 344.0 297 61.3
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.3e-89 335.9 374 50.5
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.1e-87 329.3 391 46.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.9e-67 263.1 237 58.2
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.5e-59 236.1 285 48.4
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 9.1e-54 217.6 302 40.4
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.1e-51 210.7 426 34.5
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 3.0e-49 202.6 149 65.1
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.3e-47 197.2 149 63.8
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.9e-36 159.5 269 38.3
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.7e-32 145.2 495 25.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 7.5e-32 144.8 126 55.6
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.2e-31 143.3 146 54.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.8e-31 142.1 291 34.4
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.1e-30 139.0 130 53.1
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.9e-29 135.2 94 70.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.3e-28 134.0 143 49.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-27 130.2 164 48.2
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.5e-27 128.6 141 47.5
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.2e-26 127.5 720 22.1
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.3e-25 123.2 221 35.3
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 3.0e-25 122.9 138 48.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.4e-24 119.0 93 60.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.5e-24 118.2 300 31.3
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.3e-23 117.5 109 56.0
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 2.8e-23 116.3 100 62.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.1e-22 112.5 145 48.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.1e-22 112.5 291 30.2
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.3e-20 107.5 151 41.1
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.3e-19 101.7 96 51.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.8e-18 99.8 79 59.5
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.4e-16 92.8 74 58.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.4e-16 92.8 74 58.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 7.5e-16 91.7 74 56.8
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.0e-13 83.6 121 38.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.0e-12 81.3 97 43.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.7e-12 80.5 119 38.7
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 2.3e-12 80.1 205 26.8
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.6e-10 73.9 86 41.9
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 6.2e-10 72.0 59 59.3
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 1.4e-09 70.9 46 76.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.8e-09 70.5 117 38.5
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.8e-09 70.5 117 38.5
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 5.8e-08 65.5 98 35.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 9.8e-08 64.7 57 54.4
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 6.4e-07 62.0 74 39.2
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 3.2e-06 59.7 105 36.2


User provided reference genes

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