Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 3804.2 1911 100.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 3408.6 2096 85.3
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2964.5 1991 78.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2717.2 2006 71.1
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2639.0 1926 70.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2388.2 1937 64.4
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2374.4 1937 63.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2343.9 1938 63.4
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2321.2 1939 62.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2275.4 1940 60.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2260.7 1938 61.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2234.9 1963 60.6
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2230.3 1945 60.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2219.1 1935 59.5
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2184.1 1937 59.1
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2179.8 1931 58.4
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2179.4 1936 59.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2177.5 1934 59.0
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2176.0 1934 58.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2174.8 1941 59.4
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2169.0 1934 58.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2164.8 1935 58.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2164.4 1932 58.3
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2161.7 1933 59.1
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2155.6 1934 57.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2149.0 1934 57.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2140.9 1948 57.1
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2138.6 1951 56.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2131.3 1936 57.2
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2127.1 1938 57.2
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2125.9 1935 56.9
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2118.6 1823 60.2
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2117.8 1935 56.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2117.4 1931 57.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2113.6 1938 57.0
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2109.7 1938 57.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2102.0 1939 56.8
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2099.7 1934 57.7
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2099.3 1938 57.6
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2093.5 1933 56.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2085.1 2141 53.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 1925 57.2
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2055.4 1941 55.8
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2054.3 1960 56.1
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2046.6 1941 55.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2034.2 1814 58.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2025.0 1932 55.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2015.4 1940 54.8
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2015.0 1938 55.8
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2015.0 1810 57.8
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1997.2 2235 49.0
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1996.5 1938 55.0
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1994.5 1939 53.6
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1990.7 1935 54.8
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1978.4 1939 53.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1958.3 1933 53.5
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1951.8 1935 53.4
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1950.3 1937 53.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1941.0 1943 53.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1940.6 1930 53.5
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1939.5 1945 52.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1939.1 1931 53.2
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1938.3 1933 54.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1935.6 1946 52.6
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1932.9 1936 52.9
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1931.8 1938 52.8
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1929.8 1948 52.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1915.6 1940 52.6
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1901.7 1981 51.2
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1884.8 1946 52.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1870.9 1873 54.4
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1870.5 1932 52.6
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1859.3 1570 62.0
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1802.7 1967 50.8
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1800.8 1862 51.8
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1783.5 1908 50.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1722.2 1969 48.1
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1466.4 1132 65.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1441.0 1229 60.8
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1397.9 1267 57.1
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1335.5 1828 41.3
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1239.6 1463 47.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1171.8 2016 36.9
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1132.5 1977 36.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1120.1 1026 57.7
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1082.8 2003 35.0
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1077.8 1005 56.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.4e-302 1042.7 1131 51.0
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 7.7e-270 935.3 2099 32.1
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.2e-235 821.6 914 49.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.9e-232 809.7 727 57.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 9.2e-231 805.4 1101 43.5
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.2e-226 789.6 887 48.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 4.4e-225 786.6 803 53.4
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.2e-222 778.5 920 48.9
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.0e-218 763.5 956 45.4
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 4.6e-190 670.2 552 62.0
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.3e-184 652.1 683 53.4
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.2e-142 512.7 478 55.9
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.3e-136 492.7 458 55.7
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 8.0e-134 483.4 490 54.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.2e-132 479.6 517 48.0
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.2e-132 479.6 685 41.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.3e-131 476.1 447 57.3
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 7.5e-108 397.1 342 61.1
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 7.8e-105 387.1 879 32.0
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.7e-97 362.1 360 53.9
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-91 342.4 276 63.8
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.9e-75 288.9 371 46.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 9.3e-74 283.9 216 68.5
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 9.3e-74 283.9 391 42.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.1e-70 272.7 252 57.5
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.7e-67 263.1 237 58.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 5.1e-64 251.5 195 64.1
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.9e-63 249.6 318 47.5
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.8e-62 245.7 195 62.6
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 4.9e-59 235.0 285 48.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.1e-58 231.1 220 53.2
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-55 223.8 323 39.6
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.2e-54 217.6 302 40.4
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.1e-50 204.5 540 29.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.9e-40 172.2 185 45.9
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.9e-34 153.3 284 36.3
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.0e-31 143.3 146 54.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.4e-31 142.1 291 34.4
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.8e-30 138.7 130 53.1
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.3e-29 135.2 94 70.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.2e-28 134.0 143 49.7
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.5e-28 133.7 65 100.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.7e-27 130.2 164 48.2
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.0e-27 128.6 141 47.5
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 2.7e-25 122.9 138 48.6
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.0e-24 119.4 307 31.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.9e-24 119.0 93 60.2
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.1e-23 117.5 242 32.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 5.7e-23 115.2 109 55.0
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 7.4e-23 114.8 102 59.8
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.7e-22 112.5 145 48.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 3.7e-22 112.5 291 30.2
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.2e-20 107.5 151 41.1
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 8.5e-19 101.3 96 51.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.5e-18 99.8 79 59.5
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-16 92.8 74 58.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-16 92.8 74 58.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.7e-16 91.7 74 56.8
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.3e-14 85.1 110 49.1
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.8e-13 83.6 121 38.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 7.0e-13 81.6 97 43.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.6e-12 80.5 119 38.7
vmacro05002 Vaccinium macrocarpon HOM05D014363 ORTHO05D019497 7.7e-12 78.2 67 58.2
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.8e-11 75.9 205 25.9
vmacro09311 Vaccinium macrocarpon HOM05D014363 ORTHO05D019497 6.5e-11 75.1 102 42.2
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 7.2e-10 71.6 46 76.1
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 7.2e-10 71.6 86 40.7
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.2e-09 70.9 117 38.5
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.2e-09 70.9 117 38.5
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 2.1e-09 70.1 140 35.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.3e-08 66.6 53 54.7
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 5.2e-08 65.5 98 35.7
Rhsim06G0217600 Rhododendron simsii HOM05D014363 ORTHO05D019497 5.2e-08 65.5 100 36.0
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 8.8e-08 64.7 57 54.4
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 7.5e-07 61.6 55 49.1
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.2e-06 60.1 55 47.3
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 2.2e-06 60.1 74 37.8


User provided reference genes

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