Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-153 545.8 284 100.0
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-153 545.8 284 100.0
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.9e-130 468.4 298 79.5
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.4e-119 432.6 285 81.1
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 7.0e-119 431.0 287 79.4
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 5.0e-117 424.9 256 80.9
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.2e-115 420.2 246 82.5
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 8.0e-115 417.5 246 81.7
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.3e-112 410.2 228 85.1
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.2e-112 409.5 258 77.9
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.3e-112 407.9 263 74.9
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 8.3e-112 407.5 257 75.1
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 4.1e-111 405.2 221 87.3
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 5.4e-111 404.8 226 82.7
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.2e-110 403.7 258 74.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.0e-110 402.9 228 82.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.2e-109 399.4 249 76.3
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 3.8e-109 398.7 228 83.8
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.1e-108 397.1 258 73.3
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.2e-108 395.2 250 77.6
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.5e-108 394.8 258 72.9
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 9.4e-108 394.0 243 77.0
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.2e-107 393.7 256 73.8
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 2.7e-107 392.5 221 82.4
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.7e-107 392.5 290 66.9
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 3.6e-107 392.1 228 79.8
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 8.0e-107 391.0 258 72.5
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.4e-106 390.2 241 78.0
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.8e-106 389.8 228 78.9
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.8e-106 389.8 267 70.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 5.2e-106 388.3 228 80.7
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 8.8e-106 387.5 285 74.7
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 8.8e-106 387.5 225 80.4
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.2e-105 387.1 260 71.2
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.6e-105 386.0 221 82.4
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.4e-105 385.6 227 80.6
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 3.4e-105 385.6 248 77.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.4e-105 385.2 228 78.5
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.3e-104 383.6 243 75.3
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.7e-104 382.1 227 78.4
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.7e-104 382.1 228 77.2
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 6.3e-104 381.3 253 72.7
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 8.3e-104 380.9 259 70.3
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 2.4e-103 379.4 228 78.1
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.1e-103 379.0 256 71.1
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.1e-103 378.6 240 74.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 4.1e-103 378.6 242 76.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 7.0e-103 377.9 235 75.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 9.1e-103 377.5 243 74.1
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.6e-102 376.7 244 73.8
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.0e-102 376.3 266 68.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.0e-101 374.0 243 73.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.3e-101 373.6 235 74.0
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.7e-101 373.2 221 80.1
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.7e-101 373.2 226 77.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 3.8e-101 372.1 289 64.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.1e-100 370.5 239 73.6
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.3e-100 368.6 240 72.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.6e-100 368.2 254 70.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 7.2e-100 367.9 229 76.4
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 9.5e-100 367.5 239 72.4
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.2e-99 367.1 258 69.8
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.2e-99 367.1 233 73.4
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.6e-99 366.7 243 72.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.8e-99 365.9 231 75.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 3.6e-99 365.5 231 74.5
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.6e-99 365.5 241 74.3
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 4.7e-99 365.2 241 73.0
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 6.1e-99 364.8 228 75.4
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.1e-99 364.8 227 74.9
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 6.1e-99 364.8 227 75.3
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 6.1e-99 364.8 227 74.0
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.4e-98 363.6 239 72.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 2.3e-98 362.8 259 69.1
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.3e-98 362.8 238 72.7
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 3.0e-98 362.5 259 69.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 8.9e-98 360.9 233 73.4
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.5e-97 360.1 257 67.3
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.0e-97 359.8 226 75.2
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 5.7e-97 358.2 243 70.0
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 9.8e-97 357.5 234 73.5
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 8.3e-96 354.4 245 69.0
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.1e-95 354.0 240 69.2
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 5.4e-95 351.7 264 65.5
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.0e-93 347.4 246 66.7
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 5.6e-92 341.7 254 65.0
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 8.0e-91 337.8 245 65.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 6.8e-90 334.7 259 63.7
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 3.4e-89 332.4 201 77.1
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 4.1e-87 325.5 249 63.5
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 7.0e-87 324.7 203 75.4
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 3.9e-85 318.9 183 83.6
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.9e-84 316.6 171 85.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.5e-84 316.2 239 63.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 5.6e-84 315.1 228 66.7
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 7.3e-84 314.7 224 67.9
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.2e-83 313.9 270 59.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 8.1e-83 311.2 243 64.2
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.4e-82 310.5 183 81.4
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.0e-82 308.9 221 67.0
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.0e-81 306.6 228 63.6
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 5.8e-81 305.1 208 68.3
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 9.8e-81 304.3 242 62.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 9.8e-81 304.3 225 62.2
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.7e-80 302.4 221 63.3
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.4e-79 300.4 252 59.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.2e-79 299.3 175 82.3
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 9.2e-79 297.7 183 76.5
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 2.1e-78 296.6 262 56.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.7e-77 293.5 179 76.5
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 3.1e-74 282.7 223 60.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.7e-72 275.8 235 63.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 7.3e-68 261.5 163 76.1
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.4e-65 252.3 287 53.3
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.7e-62 243.0 192 63.0
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 8.7e-61 238.0 227 54.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.0e-50 202.6 116 81.9
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 4.0e-50 202.6 265 41.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 4.5e-49 199.1 309 39.5
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 7.9e-46 188.3 274 40.5
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.0e-45 188.0 127 66.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 6.7e-45 185.3 130 66.2
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 8.1e-43 178.3 113 74.3
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 4.5e-41 172.6 119 69.7
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.0e-32 144.8 130 60.0
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.8e-32 142.9 77 85.7
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.4e-31 141.0 78 83.3
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 5.5e-31 139.0 116 56.0
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.1e-29 132.5 237 35.4
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 9.7e-28 128.3 72 79.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 5.9e-25 119.0 81 67.9
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.5e-17 94.4 77 59.7
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.6e-14 83.2 56 64.3
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 8.8e-13 78.6 76 52.6


User provided reference genes

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