Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.6e-241 839.0 412 100.0
Rhsim06G0217600 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.3e-45 186.8 362 33.7
vmacro05002 Vaccinium macrocarpon HOM05D014363 ORTHO05D019497 6.3e-36 156.0 327 34.3
Dinv41037 Davidia involucrata HOM05D014363 ORTHO05D019497 6.5e-33 146.0 241 36.1
vmacro09311 Vaccinium macrocarpon HOM05D014363 ORTHO05D019497 1.1e-32 145.2 186 44.6
Dinv41774 Davidia involucrata HOM05D014363 ORTHO05D035053 1.4e-32 144.8 298 32.9
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.9e-32 144.4 78 85.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.2e-31 141.7 78 88.5
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.6e-31 141.4 86 82.6
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 3.6e-31 140.2 78 83.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 3.6e-31 140.2 78 83.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 6.1e-31 139.4 83 77.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.9e-31 139.0 78 80.8
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.8e-30 137.9 78 80.8
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.8e-30 137.9 77 83.1
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.3e-30 137.5 77 83.1
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 8.8e-30 135.6 78 76.9
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.1e-29 135.2 78 82.1
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 2.0e-29 134.4 65 100.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 3.3e-29 133.7 78 75.6
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.4e-29 133.3 78 79.5
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 7.4e-29 132.5 78 74.4
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.7e-28 131.3 77 77.9
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.7e-28 131.3 78 74.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.7e-28 131.3 78 74.4
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 2.2e-28 131.0 77 77.9
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.8e-28 130.6 78 74.4
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 3.7e-28 130.2 78 78.2
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 6.3e-28 129.4 77 76.6
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 8.2e-28 129.0 77 77.9
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 8.2e-28 129.0 78 76.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.1e-27 128.6 78 73.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.1e-27 128.6 78 76.9
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.8e-27 127.9 77 74.0
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.8e-27 127.9 77 77.9
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.4e-27 127.5 78 75.6
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.1e-27 127.1 76 72.4
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.1e-27 127.1 76 73.7
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.1e-27 126.7 77 76.6
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 5.3e-27 126.3 82 73.2
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.3e-27 126.3 77 77.9
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 7.0e-27 125.9 105 62.9
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 7.0e-27 125.9 78 73.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 7.0e-27 125.9 77 76.6
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 7.0e-27 125.9 79 75.9
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.2e-26 125.2 77 76.6
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.6e-26 124.8 77 72.7
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 2.0e-26 124.4 77 77.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.0e-26 124.4 77 76.6
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.6e-26 124.0 77 70.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 2.6e-26 124.0 78 75.6
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.5e-26 123.6 76 75.0
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 4.5e-26 123.2 77 75.3
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.5e-26 123.2 77 74.0
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 5.9e-26 122.9 77 77.9
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 7.7e-26 122.5 78 71.8
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 7.7e-26 122.5 77 77.9
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.0e-25 122.1 77 74.0
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.3e-25 121.7 77 67.5
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.3e-25 121.7 77 75.3
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.7e-25 121.3 77 72.7
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.2e-25 120.9 77 70.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.9e-25 120.6 78 71.8
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.9e-25 120.6 77 72.7
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 3.8e-25 120.2 78 73.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.8e-25 120.2 74 71.6
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 3.8e-25 120.2 77 70.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 5.0e-25 119.8 71 74.6
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 6.5e-25 119.4 78 71.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 6.5e-25 119.4 77 71.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.5e-25 119.0 77 70.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 8.5e-25 119.0 77 70.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.1e-24 118.6 78 69.2
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.1e-24 118.6 77 70.1
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.1e-24 118.6 77 70.1
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.5e-24 118.2 77 70.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.9e-24 117.9 78 70.5
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.9e-24 117.9 77 70.1
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.9e-24 117.9 78 70.5
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.9e-24 117.9 77 72.7
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.5e-24 117.5 78 70.5
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.5e-24 117.5 78 70.5
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 3.2e-24 117.1 78 71.8
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 5.5e-24 116.3 77 72.7
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 7.2e-24 115.9 78 70.5
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 9.4e-24 115.5 76 69.7
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 9.4e-24 115.5 78 67.9
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 9.4e-24 115.5 78 71.8
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 9.4e-24 115.5 77 68.8
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.2e-23 115.2 78 70.5
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.2e-23 115.2 77 70.1
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.6e-23 114.8 78 69.2
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.1e-23 114.4 77 66.2
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.1e-23 114.4 78 70.5
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.7e-23 114.0 79 68.4
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 2.7e-23 114.0 77 67.5
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 8.0e-23 112.5 82 64.6
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.0e-22 112.1 77 66.2
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 1.4e-22 111.7 77 67.5
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.4e-22 111.7 78 69.2
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.3e-22 110.9 78 67.9
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 2.3e-22 110.9 78 61.5
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 4.0e-22 110.2 78 66.7
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 4.0e-22 110.2 78 66.7
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.7e-22 109.4 70 72.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 6.7e-22 109.4 79 67.1
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.5e-21 108.2 72 70.8
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 3.3e-21 107.1 82 64.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.7e-20 104.8 78 65.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 2.9e-17 94.0 78 60.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 8.5e-17 92.4 77 54.5
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.5e-16 91.7 77 53.2
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.9e-16 91.3 77 61.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 3.2e-16 90.5 77 59.7
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.2e-16 90.1 77 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 7.2e-16 89.4 79 55.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.2e-15 88.6 77 59.7
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 4.7e-15 86.7 53 75.5
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.8e-14 84.7 77 53.2
vmacro16362 Vaccinium macrocarpon HOM05D014363 ORTHO05D035053 4.0e-14 83.6 371 23.5
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.5e-13 81.6 77 53.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 7.7e-10 69.3 62 59.7
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.3e-09 68.6 39 79.5
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.1e-08 65.5 59 59.3
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 4.2e-08 63.5 39 74.4
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 4.2e-08 63.5 39 74.4
Actinidia10642 Actinidia chinensis HOM05D014363 ORTHO05D019497 5.5e-08 63.2 89 40.4
Dinv41770 Davidia involucrata HOM05D014363 ORTHO05D035053 5.5e-08 63.2 115 31.3
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.0e-06 57.4 50 58.0
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 5.2e-06 56.6 79 44.3


User provided reference genes

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