Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.8e-202 707.6 353 100.0
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 6.7e-71 271.9 210 70.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.4e-52 210.3 402 37.8
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.0e-46 190.7 200 51.0
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 9.8e-46 188.3 187 55.1
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.7e-43 180.3 204 48.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.5e-43 179.5 202 48.5
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.9e-43 179.1 182 52.2
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 5.9e-43 179.1 182 52.2
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.3e-42 177.9 188 50.5
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 5.0e-42 176.0 185 52.4
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.5e-41 174.5 189 50.8
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.9e-41 174.1 187 50.3
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.3e-41 173.3 183 51.9
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.3e-41 173.3 190 48.4
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 2.8e-40 170.2 196 48.0
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 2.8e-40 170.2 196 48.0
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 6.1e-40 169.1 189 47.1
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.1e-40 169.1 192 47.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.0e-39 168.3 184 49.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 6.8e-39 165.6 201 47.3
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-38 164.9 192 46.9
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.9e-37 160.2 210 42.4
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 4.9e-37 159.5 181 47.5
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.8e-36 157.5 191 46.6
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.1e-36 156.4 199 44.7
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.7e-35 153.7 195 46.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 3.5e-35 153.3 180 49.4
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 4.6e-35 152.9 191 45.5
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.0e-34 151.8 113 62.8
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.0e-34 151.8 195 45.1
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.0e-34 150.2 180 48.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.9e-34 149.8 117 61.5
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 6.6e-34 149.1 200 49.0
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.6e-34 149.1 184 45.7
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 6.6e-34 149.1 214 45.3
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 8.6e-34 148.7 211 41.2
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 7.3e-33 145.6 345 33.0
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.6e-32 144.4 199 43.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.1e-32 144.1 124 58.9
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.2e-32 142.5 176 46.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 8.0e-32 142.1 117 59.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 4.0e-31 139.8 197 43.1
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 5.2e-31 139.4 179 48.0
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 5.2e-31 139.4 192 44.8
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.6e-30 137.1 116 56.9
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.4e-30 136.3 191 42.4
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 5.8e-30 136.0 195 42.6
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 9.8e-30 135.2 203 42.9
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 9.8e-30 135.2 197 42.6
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.2e-29 134.0 115 57.4
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.4e-28 130.6 100 61.0
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.1e-28 129.8 108 58.3
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.4e-28 129.4 108 61.1
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 7.0e-28 129.0 216 38.4
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 7.0e-28 129.0 119 54.6
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 9.2e-28 128.6 118 54.2
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 9.2e-28 128.6 118 54.2
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 9.2e-28 128.6 191 43.5
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.2e-27 128.3 118 55.1
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.2e-27 128.3 113 57.5
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.6e-27 127.9 114 56.1
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.6e-27 127.9 118 55.1
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 1.6e-27 127.9 189 41.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.6e-27 127.9 118 55.1
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.0e-27 127.5 116 57.8
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.0e-27 127.5 116 57.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.7e-27 127.1 179 41.9
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 6.0e-27 125.9 112 56.2
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.7e-26 124.4 184 40.2
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 2.3e-26 124.0 118 53.4
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 3.0e-26 123.6 119 53.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.0e-26 123.6 117 52.1
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 6.6e-26 122.5 113 57.5
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.1e-25 121.7 177 40.7
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.9e-25 120.9 116 56.9
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.5e-25 120.6 174 43.7
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 2.5e-25 120.6 179 44.1
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 4.3e-25 119.8 112 53.6
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 5.6e-25 119.4 115 52.2
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 9.5e-25 118.6 180 41.1
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.8e-24 117.1 118 55.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 3.6e-24 116.7 184 44.0
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.7e-24 116.3 118 54.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-23 114.0 117 53.8
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.1e-23 113.6 117 53.8
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.1e-23 113.6 117 53.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.0e-23 113.2 117 53.8
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.8e-23 112.5 119 49.6
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 6.8e-23 112.5 90 55.6
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.2e-22 111.7 202 35.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-22 111.3 118 52.5
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.6e-22 110.5 202 35.6
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 3.4e-22 110.2 214 36.9
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.4e-22 109.8 117 53.0
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.8e-22 109.4 78 61.5
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 7.5e-22 109.0 112 48.2
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.7e-21 107.8 197 38.6
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.2e-21 107.5 112 47.3
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.9e-21 106.3 188 36.2
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 6.4e-21 105.9 77 59.7
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.1e-20 105.1 78 62.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.4e-20 104.8 134 44.8
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.9e-20 104.4 118 46.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 2.4e-20 104.0 183 37.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.4e-20 104.0 90 51.1
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.4e-20 104.0 181 40.3
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.2e-20 103.6 118 46.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 5.4e-20 102.8 193 40.9
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.6e-19 101.3 180 41.7
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 3.5e-19 100.1 175 37.1
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.6e-19 99.8 198 34.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.0e-19 99.4 83 55.4
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.7e-18 97.8 189 39.7
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.1e-18 96.3 187 38.5
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.6e-18 95.5 199 35.2
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.9e-17 94.4 111 51.4
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.5e-17 94.0 75 62.7
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 5.6e-17 92.8 117 43.6
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 7.3e-17 92.4 184 35.9
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 9.5e-17 92.0 75 58.7
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 9.5e-17 92.0 75 58.7
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 9.5e-17 92.0 174 36.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-16 91.7 75 57.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.2e-16 91.7 75 57.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.2e-16 91.7 75 57.3
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.1e-16 90.9 133 42.9
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.7e-16 89.7 207 30.9
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 6.2e-16 89.4 75 57.3
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-15 87.0 124 41.9
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.1e-15 87.0 124 41.9
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 8.9e-15 85.5 125 44.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 8.9e-15 85.5 125 44.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-14 84.7 119 42.9
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.5e-14 84.7 119 42.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.6e-14 84.0 102 49.0
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 2.6e-14 84.0 102 49.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-14 83.6 109 46.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 9.9e-14 82.0 117 45.3
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-13 81.6 125 44.8
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.2e-13 80.9 112 45.5
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.2e-13 80.9 86 53.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 8.4e-13 79.0 105 46.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-12 78.6 69 56.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.1e-12 78.6 69 56.5
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-12 78.6 119 43.7
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.1e-12 78.6 73 57.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 4.1e-12 76.6 69 55.1
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.6e-11 73.2 69 53.6
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.6e-11 73.2 69 53.6
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.7e-10 71.2 69 52.2
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 1.7e-10 71.2 160 36.2
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.5e-09 68.2 57 50.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.9e-09 67.8 106 44.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.3e-09 66.6 106 39.6
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.6e-09 66.2 67 47.8
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 2.1e-08 64.3 130 39.2
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 4.7e-08 63.2 56 51.8
Aqoxy5G03598 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.1e-07 60.5 70 48.6
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 4.0e-07 60.1 62 53.2
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 5.2e-07 59.7 85 42.4
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.0e-07 58.9 77 41.6
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 9.0e-07 58.9 69 46.4
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.2e-06 58.5 106 38.7
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.5e-06 58.2 76 40.8
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.4e-06 57.0 106 39.6
Mapoly0030s0024 Marchantia polymorpha HOM05D034947 ORTHO05D036670 4.4e-06 56.6 66 45.5
Mapoly0030s0028 Marchantia polymorpha HOM05D034947 ORTHO05D036670 4.4e-06 56.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3156 Anthoceros agrestis HOM05D018410 ORTHO05D021325 5.8e-06 56.2 131 32.8
Mapoly0297s0001 Marchantia polymorpha HOM05D034947 ORTHO05D036670 5.8e-06 56.2 57 43.9


User provided reference genes

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