Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 8.0e-48 193.4 93 100.0
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.2e-46 189.5 93 97.8
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-45 186.0 93 95.7
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 8.3e-45 183.3 93 94.6
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 9.2e-44 179.9 93 92.5
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.6e-43 179.1 92 92.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.0e-42 176.4 93 90.3
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.3e-42 176.0 93 89.2
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.7e-42 175.6 92 90.2
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.9e-42 174.9 93 89.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 5.0e-42 174.1 93 87.1
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 5.0e-42 174.1 93 89.2
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 8.6e-42 173.3 93 89.2
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 8.6e-42 173.3 92 88.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-41 172.9 93 88.2
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-41 172.9 93 88.2
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.1e-41 172.9 93 88.2
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.5e-41 172.6 93 89.2
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 5.6e-41 170.6 93 86.0
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 7.3e-41 170.2 93 87.1
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 7.3e-41 170.2 93 87.1
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.5e-41 169.9 91 87.9
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 9.5e-41 169.9 93 84.9
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.2e-40 169.5 94 87.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-40 169.5 93 84.9
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.1e-40 168.7 93 83.9
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 3.6e-40 167.9 92 85.9
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 6.2e-40 167.2 93 84.9
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 6.2e-40 167.2 93 83.9
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 6.2e-40 167.2 93 86.0
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 8.0e-40 166.8 93 84.9
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.8e-39 165.6 93 83.9
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.3e-39 165.2 89 87.6
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 82.8
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 2.3e-39 165.2 91 87.9
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 2.3e-39 165.2 91 87.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.0e-39 164.5 92 85.9
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 86.0
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 82.8
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 5.2e-39 164.1 92 84.8
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 5.2e-39 164.1 93 83.9
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 5.2e-39 164.1 92 82.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 81.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 81.7
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 83.9
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 83.9
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 8.9e-39 163.3 92 83.7
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.2e-38 162.9 92 83.7
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 80.6
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 80.6
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 82.8
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 2.0e-38 162.2 91 83.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 80.6
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 80.6
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 80.6
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 80.6
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 80.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 79.6
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 83.9
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 5.8e-38 160.6 88 89.8
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 80.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 79.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 79.6
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 78.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.2e-37 158.7 93 79.6
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 81.7
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.7e-37 157.9 86 84.9
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.7e-37 157.9 88 81.8
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 3.7e-37 157.9 93 79.6
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 80.2
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.9e-37 157.5 84 88.1
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 4.9e-37 157.5 95 78.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 4.9e-37 157.5 95 78.9
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 4.9e-37 157.5 95 82.1
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 4.9e-37 157.5 95 82.1
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 86 86.0
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.4e-36 156.0 88 83.0
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 77.4
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 5.4e-36 154.1 93 76.3
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 7.0e-36 153.7 94 79.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 7.0e-36 153.7 93 78.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 91 81.3
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.2e-35 152.9 93 77.4
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 86 83.7
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.0e-35 152.1 90 78.9
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 2.7e-35 151.8 90 80.0
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.5e-35 151.4 86 80.2
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.5e-35 151.4 93 80.6
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 4.6e-35 151.0 94 77.7
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 4.6e-35 151.0 90 77.8
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 6.0e-35 150.6 88 80.7
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.0e-34 149.8 89 79.8
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.3e-34 149.4 88 78.4
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 5.0e-34 147.5 90 77.8
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.0e-34 147.5 94 77.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 5.0e-34 147.5 93 80.6
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 6.6e-34 147.1 89 78.7
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 6.6e-34 147.1 89 78.7
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 8.6e-34 146.7 118 63.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 8.6e-34 146.7 94 75.5
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 8.6e-34 146.7 92 75.0
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.5e-33 146.0 89 78.7
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 89 78.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.5e-33 146.0 87 79.3
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 1.9e-33 145.6 92 77.2
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 2.5e-33 145.2 93 76.3
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 74.5
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 7.3e-33 143.7 90 74.4
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.3e-33 143.7 93 75.3
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.3e-33 143.7 93 75.3
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.2e-32 142.9 88 75.0
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 72.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.6e-32 142.5 85 78.8
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.6e-32 142.5 93 75.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 89 76.4
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 8.1e-32 140.2 76 86.8
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 6.8e-31 137.1 70 91.4
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.8e-31 137.1 71 91.5
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.2e-30 136.3 84 76.2
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.4e-30 134.4 71 88.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.8e-30 134.0 70 90.0
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 7.5e-30 133.7 76 80.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 9.8e-30 133.3 70 87.1
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 2.2e-29 132.1 70 85.7
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.2e-29 132.1 102 67.6
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 2.2e-29 132.1 70 87.1
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 3.7e-29 131.3 71 85.9
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.4e-29 130.6 116 57.8
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 5.4e-28 127.5 71 84.5
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.1e-27 125.6 71 84.5
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.1e-27 125.6 93 66.7
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.3e-25 117.1 71 78.9
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 2.8e-24 115.2 71 78.9
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 4.7e-24 114.4 67 76.1
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 6.2e-24 114.0 70 80.0
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.4e-23 112.8 91 67.0
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 5.2e-23 110.9 50 98.0
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.5e-22 109.4 82 64.6
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-20 103.2 98 55.1
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.6e-19 99.4 90 54.4
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.7e-19 98.6 90 56.7
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 8.1e-16 87.0 49 83.7
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 51 74.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 58 69.0
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 51 74.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 51 74.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 51 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 3.1e-15 85.1 75 53.3
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 48 79.2
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 47 72.3
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.9e-13 77.8 49 71.4
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 6.4e-13 77.4 54 66.7
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.4e-12 76.3 44 81.8
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 3.0e-10 68.6 56 57.1


User provided reference genes

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