Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 0.0e+00 1431.8 736 100.0
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 0.0e+00 1134.0 682 84.9
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 4.8e-297 1024.2 771 68.9
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.4e-259 899.8 773 64.7
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 7.5e-258 894.0 668 69.9
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.9e-256 889.4 610 75.1
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 5.2e-251 871.3 772 62.7
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 3.4e-234 815.5 718 60.9
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.9e-233 811.6 739 58.3
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 5.4e-232 808.1 771 59.1
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.6e-231 806.6 676 61.8
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.5e-229 800.0 760 57.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.6e-228 796.6 764 57.1
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.6e-228 796.6 723 59.5
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 6.2e-228 794.7 706 59.8
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.4e-227 793.5 735 58.8
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.2e-226 790.4 777 57.1
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 8.4e-225 784.3 766 58.7
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 7.9e-223 777.7 684 62.3
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.1e-222 775.0 794 54.7
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.7e-222 774.2 732 58.5
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 2.5e-221 772.7 736 59.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 3.3e-221 772.3 719 58.7
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.6e-220 770.0 778 54.2
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 2.8e-220 769.2 757 57.7
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.8e-219 766.5 713 59.2
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.2e-217 759.6 713 58.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 8.4e-217 757.7 741 56.7
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 9.3e-216 754.2 651 60.2
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 2.1e-215 753.1 748 55.5
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 4.6e-215 751.9 765 56.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.0e-214 750.7 596 65.4
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 4.3e-213 745.3 716 57.0
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 5.7e-213 745.0 721 58.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.3e-212 743.8 769 54.7
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.8e-212 742.7 766 54.8
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 4.8e-212 741.9 721 57.4
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 8.2e-212 741.1 728 57.1
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 4.1e-211 738.8 754 55.7
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 1.5e-210 736.9 730 55.9
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.5e-210 736.9 675 59.0
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.0e-209 734.2 746 56.3
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.0e-209 734.2 685 59.1
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.3e-209 733.8 777 54.2
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.9e-209 732.6 737 55.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.9e-209 732.6 737 54.8
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 5.0e-209 731.9 757 54.7
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 6.5e-209 731.5 747 54.6
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 6.1e-207 724.9 759 53.4
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 5.1e-206 721.8 711 56.4
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.1e-205 720.7 740 55.4
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 4.3e-205 718.8 759 53.0
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.3e-204 717.2 754 54.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.4e-203 713.8 690 57.7
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 5.3e-203 711.8 772 54.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.5e-202 710.3 759 52.6
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 3.4e-202 709.1 773 53.2
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.0e-201 707.6 706 56.2
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.2e-201 706.4 773 52.4
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.5e-201 704.9 578 63.0
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.9e-200 703.4 721 55.8
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 4.2e-200 702.2 767 51.8
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.7e-197 691.8 729 54.0
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.2e-196 689.9 635 58.7
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.9e-194 681.8 675 57.2
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 3.8e-193 679.1 682 55.7
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 2.5e-192 676.4 675 54.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.0e-190 669.5 478 69.7
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.0e-189 666.8 649 55.8
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 6.3e-188 661.8 730 52.1
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 9.1e-187 657.9 759 51.1
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.2e-186 657.5 758 51.3
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 2.2e-185 653.3 822 48.7
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 4.2e-184 649.0 670 52.7
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 9.4e-184 647.9 639 53.8
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 9.4e-184 647.9 621 56.4
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 9.4e-184 647.9 742 50.0
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 8.0e-183 644.8 741 50.1
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 8.0e-183 644.8 625 55.4
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.5e-181 640.6 705 51.5
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 3.3e-181 639.4 726 50.8
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.2e-177 626.7 733 49.5
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-173 614.0 498 62.2
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 4.4e-173 612.5 621 53.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 7.5e-173 611.7 643 52.9
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 6.3e-172 608.6 733 48.4
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 6.3e-172 608.6 662 51.2
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 7.0e-171 605.1 729 48.3
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 2.7e-170 603.2 731 48.6
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.6e-167 594.0 629 53.4
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.1e-160 571.2 751 47.7
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 9.8e-157 558.1 629 50.6
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 5.0e-145 519.2 419 63.2
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 2.1e-143 513.8 488 57.8
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 3.2e-139 500.0 463 56.2
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.5e-133 481.1 489 56.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.0e-133 480.7 712 44.1
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 8.4e-132 475.3 542 52.0
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.8e-126 457.6 661 44.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 9.6e-120 435.3 598 45.2
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 5.3e-118 429.5 669 40.5
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.3e-116 424.9 735 40.3
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.4e-110 404.8 760 37.8
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.6e-98 364.8 486 43.8
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 3.6e-82 310.5 391 48.3
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 3.1e-78 297.4 798 30.6
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 4.1e-70 270.4 679 32.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 5.9e-61 240.0 323 46.1
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 3.2e-59 234.2 450 37.8
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 6.8e-57 226.5 224 58.9
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.4e-49 202.2 248 48.4
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 9.8e-48 196.1 203 54.7
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 1.4e-38 165.6 557 26.6
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 4.1e-38 164.1 251 44.2
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 6.2e-34 150.2 143 56.6
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 8.9e-33 146.4 112 67.0
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 8.3e-31 139.8 621 23.5
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 3.5e-29 134.4 186 45.2
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 9.5e-27 126.3 145 49.0
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.6e-26 125.6 125 52.8
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.2e-22 111.3 98 63.3
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 3.5e-21 107.8 358 27.7
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 8.6e-20 103.2 77 72.7
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 8.6e-20 103.2 105 55.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.3e-15 89.4 114 51.8
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.1e-14 84.3 153 41.8
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.0e-13 80.5 168 31.5
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.7e-12 79.0 101 51.5
Migut.H01182 Erythranthe guttata HOM05D000463 ORTHO05D001294 1.1e-06 59.7 88 35.2
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 3.2e-06 58.2 60 36.7
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.4e-06 57.4 60 38.3
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.1e-06 57.0 60 38.3


User provided reference genes

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