Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.4e-124 448.7 212 100.0
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.6e-91 339.7 168 94.6
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.3e-74 282.7 146 89.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.7e-72 275.4 146 86.3
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.8e-72 275.0 146 86.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.0e-71 270.8 146 86.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-70 270.4 146 85.6
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.0e-70 269.6 150 85.3
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.6e-70 269.2 146 83.6
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 5.8e-70 268.1 146 82.2
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.7e-69 266.5 146 84.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.7e-69 266.5 148 83.8
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 2.2e-69 266.2 146 82.2
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 2.2e-69 266.2 146 82.2
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.9e-69 265.8 146 82.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 6.5e-69 264.6 146 82.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.9e-68 263.1 148 81.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.9e-68 263.1 148 80.4
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.2e-68 262.3 146 80.1
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 7.1e-68 261.2 146 81.5
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 9.3e-68 260.8 146 81.5
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 9.3e-68 260.8 150 78.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.7e-67 259.2 136 87.5
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.5e-67 258.8 146 80.8
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.6e-67 258.5 146 80.8
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 7.9e-67 257.7 146 82.2
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 7.9e-67 257.7 146 82.2
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 7.9e-67 257.7 149 78.5
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.0e-66 257.3 146 81.5
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.0e-66 257.3 146 80.1
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.3e-66 256.9 146 80.1
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.3e-66 256.9 147 79.6
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.8e-66 256.5 147 81.6
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.3e-66 256.1 146 76.7
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.9e-66 255.4 147 81.6
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 5.1e-66 255.0 147 81.0
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 6.7e-66 254.6 146 80.1
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 8.7e-66 254.2 146 80.1
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 8.7e-66 254.2 146 78.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-65 253.1 146 77.4
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.9e-65 253.1 146 78.1
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.3e-65 252.3 148 79.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.7e-65 251.5 147 79.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 8.2e-64 247.7 146 77.4
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.1e-63 247.3 146 78.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.8e-63 246.5 146 78.1
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.4e-63 246.1 146 77.4
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.1e-63 245.4 147 74.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.1e-63 245.4 147 74.8
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.3e-63 245.0 147 75.5
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.3e-63 245.0 146 75.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-63 244.6 147 78.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-63 244.6 147 78.2
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 6.9e-63 244.6 148 78.4
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.2e-62 243.8 153 75.8
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 2.0e-62 243.0 138 79.0
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.0e-62 243.0 146 77.4
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.4e-62 242.3 148 79.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 5.8e-62 241.5 148 78.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 7.6e-62 241.1 148 77.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 7.6e-62 241.1 146 75.3
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 7.6e-62 241.1 146 74.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 7.6e-62 241.1 146 77.4
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 7.6e-62 241.1 146 74.7
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.7e-61 240.0 144 75.0
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.2e-61 239.6 146 74.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.2e-61 239.6 148 77.7
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.9e-61 239.2 146 72.6
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 3.8e-61 238.8 147 73.5
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.8e-61 238.8 144 75.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 6.5e-61 238.0 146 72.6
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 6.5e-61 238.0 146 71.9
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.5e-61 238.0 158 69.0
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 6.5e-61 238.0 146 74.7
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 6.5e-61 238.0 146 74.7
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 8.4e-61 237.7 147 74.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.1e-60 237.3 147 72.1
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.4e-60 236.9 146 74.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.9e-60 236.5 146 70.5
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-60 236.5 147 73.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.5e-60 236.1 149 73.8
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.5e-60 236.1 146 74.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.2e-60 235.7 146 71.9
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 4.2e-60 235.3 150 75.3
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.2e-60 235.3 146 71.9
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.2e-60 235.3 147 72.1
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 5.5e-60 235.0 147 72.1
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.5e-60 235.0 148 77.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.5e-60 235.0 147 73.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-59 233.8 146 71.9
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.2e-59 233.8 147 72.8
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.1e-59 233.0 147 70.1
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.1e-59 233.0 148 72.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.1e-59 233.0 149 71.8
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-59 232.6 146 69.9
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.6e-59 231.9 132 79.5
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.6e-59 231.9 132 79.5
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.1e-59 231.5 148 73.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 6.1e-59 231.5 148 68.2
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-58 230.7 147 71.4
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.3e-58 230.3 150 72.7
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.3e-58 230.3 146 75.3
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.3e-58 229.6 130 80.8
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-58 229.6 132 79.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.0e-58 229.2 146 71.9
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.0e-58 229.2 149 71.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.0e-58 229.2 149 68.5
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-56 223.8 147 70.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-56 223.8 147 70.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-56 223.4 147 70.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-56 223.4 147 70.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.8e-56 221.9 147 72.1
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.4e-55 220.3 130 80.0
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-55 220.3 117 85.5
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.4e-55 219.5 150 70.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.1e-55 219.2 147 66.0
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.1e-55 219.2 140 70.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 5.3e-55 218.4 146 65.8
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 9.0e-55 217.6 150 68.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 9.0e-55 217.6 131 70.2
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.0e-54 216.5 125 78.4
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.2e-53 213.0 133 71.4
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.9e-53 212.6 147 68.7
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.9e-52 209.9 151 68.2
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-52 209.9 147 66.0
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.5e-52 209.5 150 65.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.5e-52 209.5 150 65.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 7.2e-52 208.0 150 68.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.2e-51 207.2 151 64.2
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-51 206.8 150 66.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-51 206.8 150 66.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-51 206.8 150 66.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 3.6e-51 205.7 146 65.8
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.6e-51 205.3 150 66.7
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 6.1e-51 204.9 150 66.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 4.3e-49 198.7 148 64.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 4.3e-49 198.7 148 64.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 4.3e-49 198.7 148 64.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 8.2e-48 194.5 134 70.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.4e-47 193.7 124 71.8
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 9.1e-47 191.0 146 63.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.2e-46 190.7 163 57.7
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 5.0e-45 185.3 146 63.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.6e-43 180.3 146 64.4
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.6e-38 163.7 146 61.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-37 160.6 101 70.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 5.0e-37 158.7 101 72.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 8.5e-37 157.9 97 80.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 4.2e-36 155.6 150 54.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.6e-30 137.1 122 54.9
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 7.5e-25 118.2 129 48.8
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.3e-24 117.5 68 79.4
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.6e-22 110.5 75 73.3
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.0e-22 110.2 126 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 8.0e-19 98.2 90 52.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 4.3e-12 75.9 45 71.1
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 9.5e-12 74.7 98 34.7
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 5.4e-07 58.9 69 39.1


User provided reference genes

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