Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 0.0e+00 2246.5 1136 100.0
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 0.0e+00 1527.3 1071 75.5
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.7e-254 882.9 1328 43.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.1e-247 859.0 1043 51.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.4e-231 807.4 1133 46.3
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 4.1e-202 709.5 1016 46.2
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 5.5e-183 646.0 1081 42.4
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.9e-176 623.6 927 45.1
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.2e-167 592.4 1067 41.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.2e-146 523.9 1178 34.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.4e-124 450.7 1220 32.5
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 3.5e-113 414.1 1225 31.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 4.8e-110 403.7 1212 31.9
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.4e-107 393.3 1165 31.9
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.1e-103 382.5 937 34.6
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 2.4e-101 374.8 1150 30.7
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.5e-100 372.1 1066 32.7
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.2e-97 362.5 993 33.6
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 8.2e-94 349.7 1142 30.6
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.4e-93 348.2 986 32.0
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.5e-91 339.7 1224 28.9
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.5e-90 338.2 1056 31.5
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 9.4e-90 336.3 1138 30.5
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.7e-87 327.0 988 31.5
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.2e-86 325.1 992 32.0
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 6.9e-85 320.1 993 31.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 7.7e-84 316.6 1160 29.5
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.9e-82 312.0 1053 29.8
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.5e-82 311.6 1040 30.9
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 2.5e-82 311.6 991 31.2
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.4e-82 309.7 1008 31.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 7.9e-81 306.6 1168 29.7
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.9e-81 306.6 981 30.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 8.8e-80 303.1 981 31.1
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 5.7e-79 300.4 985 30.3
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 7.0e-77 293.5 994 31.4
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.3e-75 289.3 1089 29.0
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.7e-75 288.9 1141 28.7
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.7e-75 288.9 997 29.4
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.8e-75 287.7 997 31.1
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.9e-74 285.4 988 30.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 5.5e-74 283.9 983 30.1
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 9.4e-74 283.1 1009 30.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.7e-73 281.6 1172 28.2
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 8.0e-73 280.0 1142 28.7
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 8.0e-73 280.0 1004 29.6
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-71 276.2 838 30.9
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.5e-71 275.8 1172 27.9
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 7.4e-71 273.5 983 30.3
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 6.3e-70 270.4 1058 27.0
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.5e-68 264.2 1010 27.7
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.0e-67 263.1 1210 26.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.8e-67 261.2 973 30.0
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.9e-66 258.8 476 41.2
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.7e-65 255.0 1146 27.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 7.5e-63 246.9 974 28.4
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.4e-61 242.7 1003 28.7
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.8e-61 242.3 1140 27.7
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.4e-61 241.9 1010 29.0
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 5.3e-61 240.7 1168 26.9
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.7e-60 238.4 1060 28.4
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 5.0e-59 234.2 1134 27.5
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.9e-58 232.3 1209 26.1
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-55 223.0 874 31.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.3e-51 208.8 954 26.8
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.8e-49 201.8 986 27.7
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.7e-46 192.6 966 28.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.4e-45 188.7 1002 25.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 7.3e-42 177.2 633 28.3
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.0e-40 173.3 1235 25.8
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 5.2e-40 171.0 525 29.9
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.8e-40 170.6 506 29.1
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 2.0e-39 169.1 937 26.9
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 2.6e-39 168.7 637 27.3
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.9e-38 165.2 1123 25.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.1e-37 163.3 1028 27.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 9.2e-37 160.2 922 27.2
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.0e-35 156.8 985 25.7
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-34 152.9 820 25.7
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 5.6e-34 151.0 1021 25.5
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.6e-33 149.4 975 27.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.4e-32 146.4 1047 24.7
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.4e-32 146.4 1047 24.7
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.4e-32 146.4 1036 24.4
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.2e-31 143.3 760 26.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.5e-31 142.9 1038 24.5
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.5e-31 142.9 591 27.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.8e-31 141.0 282 34.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.7e-30 139.4 1088 24.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.2e-30 139.0 944 26.0
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.2e-29 135.2 182 47.3
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 4.1e-29 134.8 1026 25.0
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 7.0e-29 134.0 979 25.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.2e-28 133.3 880 26.5
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.3e-27 129.8 836 25.8
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.7e-27 129.4 519 28.3
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.7e-25 121.3 212 40.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.1e-25 120.6 1042 25.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.1e-24 120.2 1040 24.5
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.8e-24 119.4 465 26.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 4.0e-24 118.2 335 31.3
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 2.9e-22 112.1 644 24.7
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.1e-21 107.5 1004 24.1
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.1e-21 107.5 477 27.5
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.2e-20 106.7 694 23.9
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.8e-20 104.0 1008 24.3
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 5.1e-19 101.3 459 25.3
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 4.3e-18 98.2 741 24.6
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.9e-16 90.5 226 28.8
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 5.8e-15 87.8 1001 23.3
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.7e-14 86.3 304 25.7
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.7e-14 86.3 707 23.2
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 4.9e-14 84.7 288 25.3
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.4e-13 83.2 550 24.4
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 2.4e-13 82.4 159 35.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 4.2e-13 81.6 431 25.3
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.6e-12 78.2 998 22.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.3e-11 75.9 260 28.5
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 5.1e-11 74.7 268 28.4
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.6e-11 74.3 279 28.7
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-10 73.2 243 26.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 3.3e-10 72.0 282 28.7
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 3.3e-10 72.0 631 24.4
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 3.3e-10 72.0 133 35.3
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 5.6e-10 71.2 241 28.6
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 9.6e-10 70.5 241 28.6
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 9.6e-10 70.5 444 22.5
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-09 70.1 241 28.6
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.6e-09 69.7 449 23.2
HPP92_003258 Vanilla planifolia HOM05D006657 ORTHO05D005964 2.8e-09 68.9 650 22.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.6e-09 68.6 295 27.5
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 3.6e-09 68.6 211 26.5
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.6e-09 68.6 262 27.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 3.6e-09 68.6 211 26.5
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 3.6e-09 68.6 211 26.5
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.6e-09 68.6 262 27.5
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 3.6e-09 68.6 237 26.6
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 6.2e-09 67.8 285 25.6
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.2e-09 67.8 373 24.7
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-08 67.0 195 28.2
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-08 67.0 239 28.0
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.1e-08 67.0 195 28.2
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.1e-08 67.0 239 28.0
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.1e-08 67.0 481 24.9
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 1.8e-08 66.2 440 22.7
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.8e-08 66.2 445 22.7
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 4.0e-08 65.1 135 31.1
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 4.0e-08 65.1 135 31.1
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 1.2e-07 63.5 499 23.6
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.5e-07 63.2 392 22.4
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.5e-07 63.2 230 27.8
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.4e-07 62.0 436 22.2
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 5.8e-07 61.2 419 25.8
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 9.9e-07 60.5 189 28.0
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 2.2e-06 59.3 497 23.3
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 2.9e-06 58.9 759 21.2
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 2.9e-06 58.9 181 24.3
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.4e-06 57.4 221 29.0


User provided reference genes

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