Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 7.8e-42 173.3 84 100.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.3e-25 119.4 89 75.3
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.0e-22 107.8 85 67.1
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.5e-21 103.6 90 64.4
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 7.5e-21 103.6 85 63.5
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.7e-20 102.4 90 64.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-20 102.1 84 61.9
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-20 102.1 84 61.9
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-20 102.1 90 64.4
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.2e-20 102.1 82 63.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 4.9e-20 100.9 88 65.9
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-19 99.8 84 60.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 4.1e-19 97.8 82 63.4
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.4e-19 97.4 85 60.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.7e-18 95.1 79 63.3
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.7e-18 95.1 74 66.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 3.5e-18 94.7 82 63.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.0e-17 93.2 85 60.0
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.3e-17 92.8 82 59.8
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-17 91.7 86 57.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.0e-17 91.7 85 58.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.9e-17 91.3 79 60.8
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.9e-17 91.3 82 52.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.9e-17 91.3 82 54.9
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 3.9e-17 91.3 84 58.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 5.1e-17 90.9 78 60.3
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 5.1e-17 90.9 84 60.7
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.1e-17 90.9 79 63.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 5.1e-17 90.9 86 53.5
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 6.6e-17 90.5 82 61.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 6.6e-17 90.5 86 59.3
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.6e-17 90.5 86 58.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 8.6e-17 90.1 84 60.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.6e-17 90.1 78 57.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-16 89.7 85 56.5
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.1e-16 89.7 80 57.5
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-16 89.0 79 59.5
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.5e-16 88.6 82 57.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.5e-16 88.6 79 59.5
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.3e-16 88.2 79 58.2
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.3e-16 88.2 82 58.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 3.3e-16 88.2 90 53.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.3e-16 88.2 82 61.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.3e-16 88.2 82 61.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.3e-16 88.2 83 59.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.3e-16 88.2 89 56.2
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.3e-16 87.8 77 53.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-16 87.8 85 57.6
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.6e-16 87.4 85 55.3
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.6e-16 87.4 82 61.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 5.6e-16 87.4 82 59.8
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 7.3e-16 87.0 83 60.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 9.5e-16 86.7 89 58.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.2e-15 86.3 84 59.5
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.2e-15 86.3 82 57.3
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-15 86.3 93 53.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.2e-15 86.3 79 58.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.2e-15 86.3 82 54.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.1e-15 85.5 82 54.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.1e-15 85.5 73 61.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-15 85.1 82 57.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.8e-15 85.1 82 56.1
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.6e-15 84.7 82 59.8
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 4.7e-15 84.3 77 57.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-14 83.2 82 54.9
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.1e-14 83.2 82 54.9
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.4e-14 82.8 86 53.5
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-14 82.8 80 57.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.4e-14 82.0 82 56.1
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 2.4e-14 82.0 80 52.5
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.1e-14 81.6 84 52.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 3.1e-14 81.6 82 54.9
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-14 81.6 82 54.9
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 4.0e-14 81.3 79 57.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 5.2e-14 80.9 85 54.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 57.3
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 6.8e-14 80.5 84 58.3
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 57.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 53.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 50.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 50.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.9e-14 80.1 82 53.7
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-13 79.7 82 53.7
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.2e-13 79.7 83 55.4
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.2e-13 79.7 86 52.3
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.5e-13 79.3 82 53.7
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-13 79.3 86 52.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-13 79.0 81 56.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.0e-13 79.0 79 51.9
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.0e-13 79.0 78 52.6
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.6e-13 78.6 87 52.9
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.6e-13 78.6 86 53.5
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.4e-13 78.2 77 58.4
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.4e-13 78.2 84 50.0
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.4e-13 77.8 80 53.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 4.4e-13 77.8 83 50.6
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.4e-13 77.8 93 48.4
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 7.6e-13 77.0 77 57.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 7.6e-13 77.0 77 57.1
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 7.6e-13 77.0 85 52.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 7.6e-13 77.0 82 53.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 7.6e-13 77.0 82 53.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 9.9e-13 76.6 77 57.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.3e-12 76.3 86 53.5
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.2e-12 75.5 79 54.4
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.9e-12 75.1 78 53.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.9e-12 75.1 82 51.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-12 74.7 79 54.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 3.8e-12 74.7 77 54.5
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 3.8e-12 74.7 81 51.9
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.9e-12 74.3 77 55.8
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.9e-12 74.3 77 54.5
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.9e-12 74.3 78 57.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.9e-12 74.3 76 51.3
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.9e-12 74.3 76 51.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.4e-12 73.9 82 50.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 8.4e-12 73.6 79 53.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.4e-12 73.6 77 53.2
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 8.4e-12 73.6 77 51.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.4e-12 73.6 77 53.2
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 56.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-11 72.8 79 51.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 51.3
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.4e-11 72.8 77 53.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.9e-11 72.4 72 54.2
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.9e-11 72.4 78 51.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.9e-11 72.4 77 51.9
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.2e-11 71.6 78 53.8
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.2e-11 71.6 81 49.4
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.1e-11 70.5 79 50.6
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.2e-11 70.1 76 52.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 9.2e-11 70.1 83 45.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.2e-10 69.7 78 52.6
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-10 69.7 76 53.9
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-10 69.7 80 52.5
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.2e-10 69.7 93 46.2
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 1.6e-10 69.3 68 55.9
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-10 69.3 79 49.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-10 69.3 76 53.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.1e-10 68.9 83 49.4
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.1e-10 68.9 80 52.5
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.7e-10 68.6 77 49.4
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 4.6e-10 67.8 81 51.9
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.6e-10 67.8 81 46.9
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 6.0e-10 67.4 80 51.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.0e-10 67.4 78 46.2
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.0e-10 67.4 85 47.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.0e-10 67.4 83 53.0
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.3e-09 66.2 154 34.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.3e-09 66.2 82 45.1
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.7e-09 65.9 78 47.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 3.0e-09 65.1 76 52.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.9e-09 64.7 76 52.6
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.9e-09 64.7 80 47.5
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.7e-09 63.5 63 50.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 8.7e-09 63.5 77 44.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 74 50.0
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.1e-08 63.2 91 45.1
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 73 46.6
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.9e-08 62.4 72 52.8
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.5e-08 62.0 74 50.0
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 2.5e-08 62.0 81 46.9
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.5e-08 62.0 62 51.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.3e-08 61.6 78 47.4
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.3e-08 61.6 73 49.3
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 3.3e-08 61.6 96 38.5
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 4.3e-08 61.2 58 55.2
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 5.6e-08 60.8 63 54.0
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 7.3e-08 60.5 35 74.3
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.3e-08 60.5 74 50.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 9.6e-08 60.1 102 41.2
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 9.6e-08 60.1 57 56.1
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.2e-07 59.7 79 46.8
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.1e-07 58.9 61 50.8
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 2.8e-07 58.5 93 40.9
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 1.1e-06 56.6 62 53.2
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 3.1e-06 55.1 35 74.3
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 6.9e-06 53.9 89 38.2


User provided reference genes

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