Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.8e-163 578.6 293 100.0
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.4e-146 523.1 294 90.5
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 1.6e-110 403.3 292 72.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.1e-110 402.9 292 73.3
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.3e-108 395.6 293 72.0
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.3e-108 395.6 292 72.6
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 4.1e-106 388.7 306 67.6
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.3e-104 383.6 306 66.0
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 2.2e-104 382.9 290 68.3
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 4.2e-103 378.6 295 69.2
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.2e-102 377.1 253 74.7
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.1e-102 374.8 293 64.2
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 1.0e-101 374.0 290 65.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.8e-101 373.2 292 67.1
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.2e-100 370.5 291 64.3
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 2.0e-100 369.8 302 65.6
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 3.4e-100 369.0 292 65.4
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 6.3e-99 364.8 291 63.2
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 6.3e-99 364.8 299 65.6
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 4.1e-98 362.1 302 65.2
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 5.4e-98 361.7 302 65.6
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 5.4e-98 361.7 299 64.9
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 5.4e-98 361.7 333 59.8
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 1.2e-97 360.5 311 64.3
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.6e-97 360.1 292 62.7
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.7e-97 359.4 300 64.0
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 4.5e-97 358.6 292 64.4
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.5e-97 358.6 300 64.0
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 1.0e-96 357.5 293 63.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.0e-96 357.5 300 63.7
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.3e-96 357.1 300 63.7
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.3e-96 357.1 300 63.7
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.7e-96 356.7 296 64.2
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 2.3e-96 356.3 290 64.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.1e-95 354.0 300 63.3
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 2.5e-95 352.8 293 62.8
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 4.2e-95 352.1 297 60.9
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 9.5e-95 350.9 292 62.0
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 9.5e-95 350.9 270 68.5
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.6e-94 350.1 302 62.9
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 1.6e-94 350.1 293 62.1
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 2.1e-94 349.7 293 63.1
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.8e-93 346.7 291 59.5
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 8.9e-93 344.4 298 61.7
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.6e-92 342.8 291 59.8
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 3.4e-92 342.4 294 62.2
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 5.7e-92 341.7 294 60.2
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 5.7e-92 341.7 294 60.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 9.8e-92 340.9 292 61.0
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 4.9e-91 338.6 295 58.0
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 1.4e-90 337.0 300 59.0
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 2.4e-90 336.3 294 59.9
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.1e-90 335.9 289 61.9
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 5.4e-90 335.1 292 61.3
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.6e-89 333.6 301 60.5
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 1.6e-89 333.6 294 59.2
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 1.5e-87 327.0 297 60.6
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.9e-87 326.6 299 59.5
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.9e-87 326.6 259 63.7
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.5e-87 326.2 299 55.5
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.2e-86 323.9 307 58.3
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 1.2e-86 323.9 312 55.8
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 4.7e-86 322.0 312 57.4
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 4.7e-86 322.0 304 58.9
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 6.1e-86 321.6 312 55.4
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 6.1e-86 321.6 312 55.4
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 6.1e-86 321.6 303 56.8
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 1.0e-85 320.9 312 55.4
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 1.0e-85 320.9 312 55.4
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 1.4e-85 320.5 294 59.2
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 4.0e-85 318.9 312 55.4
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 4.0e-85 318.9 312 54.8
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 5.2e-85 318.5 296 55.7
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 6.8e-85 318.2 300 58.7
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 6.8e-85 318.2 312 56.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 1.2e-84 317.4 312 55.4
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 3.7e-83 312.4 313 55.6
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 6.4e-83 311.6 313 55.6
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.4e-82 310.5 307 56.0
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 1.9e-82 310.1 280 58.9
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 5.4e-82 308.5 302 55.6
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 2.0e-81 306.6 296 55.1
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 5.0e-80 302.0 265 58.9
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.9e-79 300.1 300 56.0
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.9e-79 300.1 308 53.6
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 7.3e-79 298.1 311 53.4
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.4e-77 293.9 292 58.6
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.6e-76 289.7 296 57.4
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 6.4e-75 285.0 257 59.5
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.3e-75 284.6 206 72.3
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 1.6e-73 280.4 264 55.3
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.7e-72 276.9 292 53.1
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 3.9e-72 275.8 308 51.0
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 8.6e-72 274.6 291 54.0
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.2e-70 270.8 279 56.3
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.8e-69 266.9 305 49.8
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 8.9e-69 264.6 294 52.0
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 1.3e-67 260.8 203 68.0
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 1.2e-65 254.2 302 48.7
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.1e-63 247.7 290 49.7
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.0e-56 224.6 230 51.7
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.3e-54 217.6 242 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 4.2e-50 202.6 293 43.3
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.9e-48 196.1 300 42.7
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.8e-46 189.9 304 41.4
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 6.9e-45 185.3 188 52.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 6.9e-45 185.3 271 42.8
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.5e-44 182.6 304 41.4
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 1.7e-43 180.6 296 38.9
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.9e-43 179.9 296 38.9
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 4.9e-43 179.1 142 61.3
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 7.1e-42 175.3 126 71.4
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 7.9e-41 171.8 134 69.4
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 3.9e-40 169.5 297 37.7
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 7.6e-36 155.2 177 48.6
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 3.2e-34 149.8 295 39.0
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 5.5e-34 149.1 119 68.1
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 5.7e-31 139.0 139 59.0
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 9.6e-31 138.3 119 63.0
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 8.4e-27 125.2 149 47.7
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.1e-25 120.6 300 33.7
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 4.6e-25 119.4 120 53.3
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.6e-25 119.4 177 40.7
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-24 117.1 177 40.1
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 1.5e-23 114.4 120 54.2
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 5.9e-20 102.4 89 59.6
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.3e-19 101.3 158 40.5
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.2e-19 100.5 125 48.8
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 3.8e-19 99.8 97 58.8
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.1e-15 88.2 97 45.4
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.7e-14 83.2 94 53.2
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 3.3e-07 60.1 86 39.5
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 4.8e-06 56.2 61 54.1
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 8.2e-06 55.5 62 50.0


User provided reference genes

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