Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.6e-101 372.9 200 100.0
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.9e-73 277.7 210 75.7
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-71 273.5 211 71.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-71 273.5 211 71.6
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.8e-68 260.8 211 67.3
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.8e-68 260.8 211 67.3
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.6e-67 259.2 211 73.0
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 5.9e-64 248.1 210 66.2
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.9e-62 243.0 204 69.1
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 5.5e-62 241.5 204 68.6
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 2.1e-61 239.6 208 63.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.6e-61 238.8 201 67.2
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.8e-58 228.4 210 66.7
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.5e-54 216.9 211 61.1
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.5e-54 216.1 212 62.7
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 4.2e-54 215.3 211 55.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 8.8e-52 207.6 209 61.2
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.4e-51 205.3 209 58.4
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.4e-51 205.3 202 57.4
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 2.8e-50 202.6 209 59.8
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.7e-50 202.2 209 58.4
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.3e-50 201.4 209 57.9
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.3e-50 201.4 209 57.9
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 8.3e-50 201.1 201 63.7
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 8.3e-50 201.1 201 63.7
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.1e-49 200.7 212 59.9
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.8e-49 199.9 209 57.4
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.1e-49 198.7 208 58.7
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 9.1e-49 197.6 200 61.0
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 2.7e-48 196.1 198 61.6
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.9e-48 194.9 211 58.3
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.8e-47 192.2 192 58.3
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.1e-46 190.7 204 59.8
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.5e-46 190.3 212 59.4
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 2.5e-46 189.5 210 56.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 4.2e-46 188.7 211 55.5
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 5.5e-46 188.3 203 58.6
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 7.2e-46 188.0 202 59.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 9.5e-46 187.6 198 59.6
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.6e-45 186.8 214 57.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.6e-45 186.8 214 57.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.8e-45 186.0 197 58.4
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.7e-45 185.3 209 56.9
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 6.1e-45 184.9 210 56.2
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 6.1e-45 184.9 214 57.5
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.8e-44 183.3 199 59.3
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 4.0e-44 182.2 202 52.0
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 6.8e-44 181.4 211 57.3
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.9e-44 181.0 202 58.4
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.2e-43 180.6 119 92.4
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-43 179.5 199 59.3
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 5.7e-43 178.3 185 58.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 7.5e-43 177.9 198 56.6
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 9.8e-43 177.6 207 56.0
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 6.3e-42 174.9 211 54.0
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.3e-42 174.5 201 57.7
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.4e-41 173.7 202 58.9
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.8e-41 173.3 202 56.4
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.8e-41 173.3 205 52.7
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 2.4e-41 172.9 195 58.5
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-41 172.9 192 62.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 7.0e-41 171.4 208 55.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.6e-40 170.2 205 51.7
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 2.0e-40 169.9 211 54.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 5.9e-40 168.3 200 53.5
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.3e-39 167.2 213 53.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 2.3e-39 166.4 211 52.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 8.6e-39 164.5 209 51.7
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.5e-38 163.7 189 52.4
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 3.3e-38 162.5 211 50.2
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.3e-38 162.2 179 57.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.5e-38 161.0 198 56.1
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 9.5e-38 161.0 198 56.1
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.2e-37 160.6 200 55.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.8e-37 159.5 205 53.7
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 3.6e-37 159.1 207 50.2
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.6e-37 159.1 211 51.7
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-36 157.1 198 55.6
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.4e-36 157.1 196 56.6
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 5.2e-36 155.2 210 50.5
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.5e-35 153.7 188 55.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.0e-35 153.3 195 53.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.6e-35 152.9 187 49.7
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.6e-35 152.9 201 52.7
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 3.4e-35 152.5 188 55.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.9e-34 149.4 191 47.6
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 2.9e-34 149.4 187 47.1
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 2.9e-34 149.4 214 50.9
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.7e-34 149.1 199 49.2
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.9e-34 148.7 202 48.5
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.4e-33 147.1 196 54.1
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.8e-33 146.7 147 54.4
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.8e-33 146.7 203 53.7
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.4e-33 146.4 202 53.0
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.2e-33 146.0 196 47.4
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 4.1e-33 145.6 195 51.8
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.4e-33 145.2 198 48.0
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.4e-33 145.2 197 47.2
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.2e-33 144.4 202 52.5
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 9.2e-33 144.4 195 52.3
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.2e-32 144.1 197 47.7
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.0e-32 143.3 187 48.1
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 2.0e-32 143.3 195 51.3
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 2.0e-32 143.3 201 49.8
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.0e-32 143.3 210 48.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.0e-32 143.3 191 49.7
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.0e-32 143.3 207 52.2
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.7e-32 142.9 192 46.9
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.7e-32 142.9 188 54.8
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 3.5e-32 142.5 216 45.4
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.5e-32 142.5 197 47.7
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 6.0e-32 141.7 178 57.3
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.3e-31 140.6 210 47.1
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-31 140.6 210 47.1
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.9e-31 139.0 210 47.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.0e-31 138.7 201 48.3
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 5.0e-31 138.7 185 54.6
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 6.6e-31 138.3 198 52.5
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 8.6e-31 137.9 182 46.7
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-30 137.5 210 46.7
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-30 137.1 193 47.7
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.5e-30 136.3 210 46.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.5e-30 136.3 201 48.8
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 3.3e-30 136.0 178 55.1
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.3e-30 135.6 193 46.6
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.3e-30 134.8 210 45.7
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.3e-30 134.8 179 55.9
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 9.5e-30 134.4 201 47.8
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 9.5e-30 134.4 179 55.3
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.6e-29 133.7 192 47.9
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.1e-29 133.3 248 39.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.6e-29 132.5 185 53.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.1e-28 131.0 180 43.9
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-28 131.0 188 46.8
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.4e-28 130.6 189 47.1
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.8e-28 130.2 195 50.3
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 3.1e-28 129.4 210 46.2
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-28 129.4 179 54.2
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 3.1e-28 129.4 187 54.0
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.0e-28 129.0 208 51.4
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 5.2e-28 128.6 198 54.0
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.2e-28 128.6 188 48.9
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-27 127.5 182 51.1
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.2e-27 127.5 185 50.3
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.2e-27 127.5 191 48.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.0e-27 126.7 190 46.3
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 5.8e-27 125.2 188 46.3
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 7.5e-27 124.8 147 50.3
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.7e-26 123.6 199 46.7
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 2.9e-26 122.9 190 45.3
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 8.3e-26 121.3 204 42.2
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.1e-25 120.9 194 45.9
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.2e-25 119.4 199 43.7
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 3.2e-25 119.4 179 50.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 2.0e-24 116.7 207 47.8
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 2.7e-24 116.3 191 45.0
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.7e-24 116.3 201 44.8
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.7e-24 116.3 192 50.5
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 4.6e-24 115.5 158 56.3
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.0e-23 112.8 122 54.9
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.6e-23 111.7 198 45.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.5e-22 110.5 198 46.0
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.3e-22 109.0 174 46.6
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 6.8e-20 101.7 132 42.4
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.2e-19 100.9 219 43.8
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.5e-19 100.5 210 38.6
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.5e-19 98.2 236 39.8
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.7e-18 95.9 220 41.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 1.4e-17 94.0 203 42.4
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 7.1e-17 91.7 88 75.0
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 7.1e-17 91.7 188 44.1
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.2e-16 90.9 89 64.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.2e-16 90.9 89 64.0
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.1e-16 90.1 84 61.9
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.3e-15 86.7 135 53.3
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.9e-15 85.9 207 41.5
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 9.5e-14 81.3 184 42.4
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 3.1e-12 76.3 209 39.7
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-11 73.9 70 65.7
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 5.8e-11 72.0 198 42.4
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 5.8e-11 72.0 197 40.1
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 1.4e-09 67.4 50 80.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.4e-09 67.4 142 34.5
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.6e-08 63.9 50 78.0
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 6.0e-08 62.0 93 57.0
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 5.1e-07 58.9 154 38.3


User provided reference genes

Program Settings