Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 2.3e-290 1001.5 512 100.0
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.0e-216 756.9 534 74.3
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 4.1e-194 681.8 500 73.2
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 9.8e-188 660.6 506 68.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 5.9e-177 624.8 461 73.1
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.0e-160 570.9 502 61.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.2e-158 563.9 506 60.5
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.1e-157 560.8 514 58.4
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.7e-155 553.5 506 59.1
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.3e-151 538.9 500 56.8
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 8.1e-150 534.6 504 56.3
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.8e-149 533.5 504 57.1
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.0e-148 530.0 501 57.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 5.8e-148 528.5 512 55.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 9.9e-148 527.7 501 56.9
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.9e-147 526.2 501 58.9
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 3.8e-147 525.8 501 58.7
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 3.0e-144 516.2 504 55.4
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 8.6e-144 514.6 504 56.3
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.5e-143 513.1 511 55.8
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.8e-142 509.6 528 54.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.8e-141 506.9 524 54.2
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.2e-140 504.2 503 55.7
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 5.8e-140 501.9 507 53.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 5.4e-138 495.4 509 55.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 9.3e-138 494.6 498 53.0
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.7e-137 493.0 505 54.9
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 6.0e-137 491.9 538 53.0
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 7.8e-137 491.5 502 53.6
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.8e-137 491.5 508 53.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.1e-136 488.8 505 52.7
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.6e-136 488.4 501 54.3
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 2.5e-135 486.5 508 53.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.6e-134 483.8 506 53.0
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 2.1e-134 483.4 501 54.1
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.2e-134 481.9 501 53.9
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.2e-134 481.9 494 54.9
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.4e-133 479.9 504 53.4
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.3e-131 474.2 499 50.3
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.1e-130 471.1 504 51.4
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.0e-128 464.5 507 51.7
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.0e-128 464.5 499 49.7
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 4.5e-124 449.1 510 50.2
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 8.4e-123 444.9 502 49.8
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 9.3e-122 441.4 514 51.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 9.3e-122 441.4 508 50.6
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.7e-121 439.9 501 49.9
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 7.9e-121 438.3 505 48.7
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 7.9e-121 438.3 515 49.3
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.0e-120 438.0 499 49.7
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.0e-120 438.0 499 48.7
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.0e-120 438.0 511 50.5
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.9e-120 436.0 511 49.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 6.7e-120 435.3 518 48.6
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.1e-119 434.5 502 49.4
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.5e-119 434.1 507 49.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 2.5e-119 433.3 499 49.1
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.3e-119 433.0 509 47.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 4.3e-119 432.6 532 47.9
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 4.3e-119 432.6 508 47.8
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 9.6e-119 431.4 503 48.1
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-118 431.0 511 48.9
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.6e-118 430.6 511 48.9
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.7e-118 429.5 511 48.3
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-117 427.9 514 48.8
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 5.3e-117 425.6 508 47.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 5.3e-117 425.6 507 48.7
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.0e-116 423.7 516 46.9
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 4.5e-116 422.5 504 48.4
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 7.6e-116 421.8 499 49.5
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 1.3e-115 421.0 508 47.6
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.8e-115 419.5 528 47.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 4.2e-114 416.0 697 40.7
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 2.7e-113 413.3 503 48.9
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 2.7e-113 413.3 502 46.4
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.8e-112 410.6 530 45.7
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 8.7e-112 408.3 508 48.2
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 1.5e-111 407.5 501 49.3
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.7e-111 405.6 575 43.1
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.3e-110 404.4 506 48.8
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.1e-110 403.7 504 46.4
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.3e-107 394.4 506 44.3
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.7e-105 386.7 482 46.1
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.0e-104 384.8 360 57.2
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 3.0e-104 383.3 359 57.1
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.9e-104 382.9 507 46.2
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.1e-101 371.7 456 47.8
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.5e-100 370.9 499 44.9
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 5.9e-100 369.0 509 42.2
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.2e-99 367.1 507 44.0
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 5.0e-99 365.9 506 43.5
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 3.2e-98 363.2 499 43.9
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.0e-96 358.2 513 41.1
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.0e-96 356.7 518 40.9
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 3.0e-96 356.7 504 42.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 6.7e-96 355.5 502 43.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 4.4e-95 352.8 514 40.7
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 7.4e-95 352.1 502 42.4
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.8e-94 350.1 513 41.3
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 8.2e-94 348.6 514 40.1
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 8.2e-94 348.6 514 40.1
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.1e-93 348.2 528 41.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.8e-93 347.4 514 39.9
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-93 347.4 482 44.2
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.9e-93 345.5 510 39.6
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.5e-92 344.4 288 66.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.4e-92 343.2 513 39.8
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 6.5e-91 339.0 510 44.1
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.4e-90 337.8 509 39.5
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 5.5e-90 335.9 509 39.3
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 7.4e-87 325.5 305 56.4
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 8.5e-83 312.0 523 38.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 4.7e-81 306.2 506 38.3
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.8e-80 304.3 496 39.3
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 4.4e-79 299.7 524 38.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.7e-78 296.6 392 44.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.8e-78 296.2 294 55.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 3.5e-76 290.0 496 37.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.5e-74 284.6 512 35.7
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.1e-69 266.5 363 43.3
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.5e-66 256.1 317 47.0
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.8e-64 251.1 464 37.3
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.2e-64 249.6 362 42.0
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.6e-63 247.3 306 45.8
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.6e-63 247.3 297 46.5
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.4e-61 240.7 368 42.9
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.5e-55 221.5 188 59.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.4e-55 219.9 451 35.0
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 7.0e-53 212.6 520 33.8
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.8e-48 198.0 128 75.8
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 7.5e-47 192.6 344 37.5
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 3.5e-44 183.7 249 45.8
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 3.7e-38 163.7 167 49.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.2e-28 132.1 123 54.5
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.7e-27 128.3 128 53.9
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 2.5e-26 124.4 115 50.4
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 9.6e-26 122.5 115 49.6
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 3.6e-25 120.6 125 48.0
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 3.1e-24 117.5 110 49.1
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 9.9e-23 112.5 187 36.9
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 6.4e-22 109.8 618 22.8
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 4.2e-21 107.1 174 37.4
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 3.5e-20 104.0 105 53.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 7.3e-18 96.3 206 29.1
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.2e-15 89.0 280 25.0
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 9.3e-13 79.3 300 26.3
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 3.5e-12 77.4 87 52.9
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 2.4e-08 64.7 52 63.5
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 5.3e-08 63.5 218 28.0
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 7.6e-07 59.7 120 37.5


User provided reference genes

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