Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 1.6e-109 399.4 201 100.0
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 2.0e-43 179.9 169 62.7
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 4.6e-40 168.7 165 58.8
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 1.3e-39 167.2 148 64.9
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 5.6e-38 161.8 168 56.5
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 4.7e-37 158.7 148 60.8
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 3.7e-34 149.1 151 58.9
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 4.6e-32 142.1 149 56.4
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 1.1e-30 137.5 149 56.4
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 1.2e-29 134.0 151 51.0
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 6.2e-29 131.7 153 51.0
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 1.1e-28 131.0 152 49.3
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.1e-28 131.0 147 53.7
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 5.2e-28 128.6 148 52.0
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 6.8e-28 128.3 149 50.3
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 8.9e-28 127.9 151 49.7
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 1.2e-27 127.5 155 50.3
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.2e-27 127.5 143 54.5
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 1.2e-27 127.5 148 52.7
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 2.6e-27 126.3 154 50.6
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 2.6e-27 126.3 147 51.7
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 7.6e-27 124.8 151 53.6
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.3e-26 124.0 148 51.4
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.2e-26 123.2 158 46.8
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.2e-26 123.2 144 50.7
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 8.4e-26 121.3 144 50.0
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 4.2e-25 119.0 144 49.3
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 4.2e-25 119.0 200 42.0
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 9.2e-25 117.9 149 49.0
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.6e-24 117.1 153 47.1
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 1.6e-24 117.1 151 50.3
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 4.6e-24 115.5 147 50.3
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 1.7e-23 113.6 148 46.6
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 1.7e-23 113.6 153 48.4
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 2.3e-23 113.2 138 44.9
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 8.7e-23 111.3 142 50.0
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 1.1e-22 110.9 126 55.6
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 1.1e-22 110.9 167 41.3
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 1.1e-22 110.9 138 44.2
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 1.1e-22 110.9 150 46.7
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 2.5e-22 109.8 160 43.1
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 2.5e-22 109.8 150 45.3
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.2e-21 107.5 159 42.1
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.6e-21 107.1 161 46.0
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 2.1e-21 106.7 150 46.0
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 2.1e-21 106.7 150 44.0
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 3.6e-21 105.9 157 45.9
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 4.7e-21 105.5 141 48.2
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 4.7e-21 105.5 150 45.3
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 4.7e-21 105.5 142 48.6
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 8.1e-21 104.8 150 43.3
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 8.1e-21 104.8 139 48.2
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 8.1e-21 104.8 139 48.2
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.1e-20 104.4 146 44.5
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 2.4e-20 103.2 147 43.5
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 2.4e-20 103.2 148 41.9
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 2.4e-20 103.2 138 44.2
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 3.1e-20 102.8 147 43.5
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 2.6e-19 99.8 139 45.3
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 4.4e-19 99.0 138 47.8
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 5.8e-19 98.6 139 46.8
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 7.6e-19 98.2 140 47.9
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 7.6e-19 98.2 140 47.9
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 7.6e-19 98.2 138 44.9
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 9.9e-19 97.8 140 46.4
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 6.4e-18 95.1 140 46.4
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 8.4e-18 94.7 146 43.8
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 1.1e-17 94.4 150 43.3
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.1e-17 94.4 139 43.9
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.4e-17 94.0 120 45.0
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 2.4e-17 93.2 140 44.3
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 7.1e-17 91.7 135 43.7
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 9.3e-17 91.3 140 44.3
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.2e-16 90.9 150 40.7
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 2.7e-16 89.7 148 41.9
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 4.6e-16 89.0 126 45.2
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 4.6e-16 89.0 126 45.2
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 4.6e-16 89.0 128 46.1
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 6.0e-16 88.6 117 48.7
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 6.0e-16 88.6 143 42.0
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 7.8e-16 88.2 127 43.3
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 1.0e-15 87.8 145 42.8
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 1.3e-15 87.4 145 42.8
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 1.3e-15 87.4 125 44.0
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 1.3e-15 87.4 125 44.0
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 1.3e-15 87.4 125 44.0
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.3e-15 87.4 141 44.0
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 1.3e-15 87.4 147 40.8
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 3.0e-15 86.3 140 42.9
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 5.1e-15 85.5 154 40.9
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 6.6e-15 85.1 140 40.0
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.5e-14 84.0 154 41.6
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 1.5e-14 84.0 154 41.6
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 5.6e-14 82.0 148 39.9
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 9.6e-14 81.3 169 38.5
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 1.6e-13 80.5 141 37.6
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 8.1e-13 78.2 103 47.6
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 1.4e-12 77.4 53 73.6
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 2.4e-12 76.6 111 44.1
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 3.1e-12 76.3 130 39.2
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.5e-11 73.9 121 41.3
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 9.9e-11 71.2 115 40.9
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 2.2e-10 70.1 132 34.8
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 6.4e-10 68.6 77 45.5
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 2.1e-08 63.5 85 43.5
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 2.3e-07 60.1 58 60.3
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 3.0e-07 59.7 76 51.3
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 8.7e-07 58.2 141 27.0
Actinidia03077 Actinidia chinensis HOM05D006478 ORTHO05D008071 2.5e-06 56.6 29 89.7
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.6e-06 54.7 69 52.2


User provided reference genes

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