Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 4.4e-141 504.6 249 100.0
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 2.5e-11 73.6 45 77.8
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 7.2e-11 72.0 45 75.6
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 9.4e-11 71.6 54 61.1
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 9.4e-11 71.6 54 61.1
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 1.6e-10 70.9 45 73.3
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.6e-10 70.9 45 73.3
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.1e-10 70.5 45 71.1
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.1e-10 70.5 45 71.1
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 2.1e-10 70.5 45 71.1
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.7e-10 69.3 45 73.3
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 4.7e-10 69.3 45 73.3
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.1e-10 68.9 45 68.9
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.1e-10 68.9 45 68.9
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 6.1e-10 68.9 45 68.9
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 6.1e-10 68.9 45 64.4
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 6.1e-10 68.9 45 73.3
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 1.0e-09 68.2 45 71.1
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.0e-09 68.2 45 66.7
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 1.4e-09 67.8 45 73.3
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 1.8e-09 67.4 45 68.9
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.3e-09 67.0 46 65.2
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 2.3e-09 67.0 45 73.3
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 3.0e-09 66.6 45 71.1
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 3.0e-09 66.6 46 60.9
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 3.0e-09 66.6 46 60.9
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 4.0e-09 66.2 45 64.4
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 4.0e-09 66.2 46 60.9
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 5.2e-09 65.9 45 68.9
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 5.2e-09 65.9 45 68.9
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 5.2e-09 65.9 45 68.9
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 5.2e-09 65.9 45 68.9
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 5.2e-09 65.9 45 71.1
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 71.1
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 71.1
DCAR_024764 Daucus carota HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 64.4
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 6.7e-09 65.5 46 65.2
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 64.4
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 66.7
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 68.9
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 68.9
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 6.7e-09 65.5 45 62.2
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 8.8e-09 65.1 44 68.2
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 8.8e-09 65.1 45 73.3
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 8.8e-09 65.1 45 68.9
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 8.8e-09 65.1 46 60.9
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 8.8e-09 65.1 45 64.4
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.2e-08 64.7 45 64.4
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.2e-08 64.7 45 66.7
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 1.2e-08 64.7 45 66.7
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 1.2e-08 64.7 46 63.0
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 1.5e-08 64.3 45 66.7
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.5e-08 64.3 46 60.9
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.5e-08 64.3 45 64.4
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 1.5e-08 64.3 46 63.0
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.5e-08 64.3 45 66.7
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 2.0e-08 63.9 45 66.7
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 2.0e-08 63.9 46 60.9
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 2.6e-08 63.5 45 60.0
Zm00001eb094930 Zea mays HOM05D003385 ORTHO05D003844 2.6e-08 63.5 46 60.9
Zm00001eb303930 Zea mays HOM05D003385 ORTHO05D003844 2.6e-08 63.5 46 60.9
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 3.3e-08 63.2 46 60.9
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 4.4e-08 62.8 45 64.4
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 4.4e-08 62.8 45 60.0
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 4.4e-08 62.8 45 62.2
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 4.4e-08 62.8 46 60.9
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 5.7e-08 62.4 46 60.9
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 5.7e-08 62.4 45 66.7
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 5.7e-08 62.4 45 62.2
Os07g0239500 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 7.5e-08 62.0 46 56.5
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 7.5e-08 62.0 61 47.5
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 9.7e-08 61.6 46 63.0
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 9.7e-08 61.6 46 60.9
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 9.7e-08 61.6 45 60.0
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 9.7e-08 61.6 45 62.2
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 9.7e-08 61.6 45 64.4
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 1.3e-07 61.2 46 60.9
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.3e-07 61.2 46 58.7
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 1.3e-07 61.2 45 57.8
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 1.3e-07 61.2 45 66.7
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 1.3e-07 61.2 45 64.4
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 1.7e-07 60.8 45 60.0
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 1.7e-07 60.8 45 62.2
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 1.7e-07 60.8 45 64.4
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.7e-07 60.8 45 64.4
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.7e-07 60.8 46 56.5
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 2.2e-07 60.5 45 57.8
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.8e-07 60.1 46 63.0
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 3.7e-07 59.7 45 60.0
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 3.7e-07 59.7 45 62.2
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 3.7e-07 59.7 45 62.2
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 3.7e-07 59.7 46 58.7
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 3.7e-07 59.7 46 60.9
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 4.8e-07 59.3 45 57.8
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 4.8e-07 59.3 46 58.7
Os05g0118800 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 4.8e-07 59.3 46 58.7
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 6.3e-07 58.9 45 55.6
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 6.3e-07 58.9 45 62.2
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 6.3e-07 58.9 45 57.8
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 6.3e-07 58.9 45 53.3
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 6.3e-07 58.9 45 57.8
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 8.2e-07 58.5 45 57.8
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 8.2e-07 58.5 45 60.0
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 8.2e-07 58.5 46 56.5
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 8.2e-07 58.5 45 60.0
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 8.2e-07 58.5 45 60.0
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.1e-06 58.2 45 57.8
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 1.1e-06 58.2 45 57.8
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 1.4e-06 57.8 45 57.8
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 1.4e-06 57.8 45 62.2
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 1.8e-06 57.4 71 38.0
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.8e-06 57.4 45 55.6
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 1.8e-06 57.4 45 55.6
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 1.8e-06 57.4 46 56.5
Prupe.5G071800 Prunus persica HOM05D003385 ORTHO05D003844 1.8e-06 57.4 46 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 55.6
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 55.6
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 57.8
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.4e-06 57.0 42 59.5
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 2.4e-06 57.0 46 56.5
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 53.3
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 55.6
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 2.4e-06 57.0 45 60.0
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 2.4e-06 57.0 46 60.9
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 3.1e-06 56.6 44 59.1
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 57.8
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 60.0
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 51.1
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 57.8
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 55.6
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 3.1e-06 56.6 45 51.1
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 3.1e-06 56.6 45 55.6
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 4.1e-06 56.2 45 53.3
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 4.1e-06 56.2 45 57.8
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 4.1e-06 56.2 45 55.6
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 4.1e-06 56.2 45 55.6
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 7.0e-06 55.5 45 55.6
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 7.0e-06 55.5 45 55.6
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 7.0e-06 55.5 45 55.6
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 7.0e-06 55.5 46 54.3
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 7.0e-06 55.5 46 54.3
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 7.0e-06 55.5 46 52.2
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 9.1e-06 55.1 45 48.9
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 9.1e-06 55.1 45 57.8
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 9.1e-06 55.1 46 52.2
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 9.1e-06 55.1 46 52.2


User provided reference genes

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